Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq784841 513 2e-140 seq585748 452 5e-122 seq585752 342 6e-89 seq492030 309 4e-79 seq567144 134 2e-26 seq572160 95.1 1e-14 seq572830 82.4 9e-11 >seq784841 Length=3474 Score = 513 bits (568), Expect = 2e-140 Identities = 684/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||| ||||||| | ||||| || | | || || | | ||| Sbjct 2964 TTTACATTGGATGGGTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 2906 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| |||| || |||| || || || || ||||| || |||||||| ||||| || Sbjct 2905 TTTATTATTGCCTTCATTGTTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTT 2846 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || |||||||| ||||||||| | || |||||||| || | | || | || Sbjct 2845 TCTGGGTCTCTACTTTATGGAAACGATATTATCTCAGGTGCCATTATTCCTACTTCTGCA 2786 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||||| | || || |||||||||||||||||| || | ||||| || ||| | ||| Sbjct 2785 GCTATCGGTTTGCATTTTTACCCAATCTGGGAAGCAACATCCGTTGATGAGTGGTTATAC 2726 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 || | || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 2725 AACTGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 2666 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||| |||||| | | || || ||||| |||||||| | ||||||| Sbjct 2665 GGTCGTGAGTGGGAAATTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTTTTGCATAT 2606 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 | | || || | || || || || |||||| | |||| ||| | ||||||||| | Sbjct 2605 TTAACTCCTGTTGCAGCTGCTATCGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 2546 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || ||||| ||||| |||||||||||| ||||||||||| Sbjct 2545 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTATTCCAA 2486 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 2485 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 2426 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTG-TTACTTCTTCACTTGTTAGAGAGAC 176744 || || || ||| || ||||| || |||| | |||||| | | || || || Sbjct 2425 GGCTCCCTATTCAATGCTATGCATGG-TTCCTTGATAACTTCTAGTTTGATCAGGGAAAC 2367 Query 176745 AACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 || ||||| ||||| || | ||||||||||| || ||||| ||||| || || || Sbjct 2366 CACAGAAAATGAATCTACTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAA 2307 Query 176805 CATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAA 176864 |||||||| || || ||||| ||||| || || || ||||| ||| || ||| || || Sbjct 2306 TATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATATTCCAATATACTAGTTTTAACAA 2247 Query 176865 CTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGC 176924 ||| | | ||||||||| | || || | || || || | |||||||| ||||| Sbjct 2246 CTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGC 2187 Query 176925 AATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTT 176984 | ||| || |||| ||||| |||||| | ||||||||||| ||| |||| ||||| | Sbjct 2186 TTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCTACCAATCTGTAGT 2127 Query 176985 AGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGG 177044 || | || || ||| ||| |||| |||||| | || ||||| |||||||| Sbjct 2126 TGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATCAATCGTGCTAACCTTGG 2067 Query 177045 TATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 | ||||||||||||| || ||||||||||| |||||||| || || Sbjct 2066 TCTGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTGGA 2022 >seq585748 Length=906 Score = 452 bits (500), Expect = 5e-122 Identities = 596/824 (72%), Gaps = 8/824 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTG-CTGCAGCATGT 176205 ||||| |||| ||||||||||| | ||||| || || | || | ||| | | | Sbjct 821 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC----CTTATTGACCGCAACTTTT 766 Query 176206 ---TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCA 176262 ||||| |||| || ||| | || || || || ||||| || |||||||| ||||| Sbjct 765 GTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCT 706 Query 176263 GTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCA 176322 || | || |||||||| || |||||||| || |||||||| || | | || | || Sbjct 705 GTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCT 646 Query 176323 AACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTC 176382 ||||||| | || || ||||||||||||||||||||| | ||||| || ||| | Sbjct 645 GCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAGTGGTTA 586 Query 176383 TACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTAC 176442 ||||| || || || || |||| |||| | ||| || | | ||| | | |||| Sbjct 585 TACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGTGTAGCTTGTTAC 526 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | | || || ||||| |||||||| ||||||| Sbjct 525 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCA 466 Query 176503 TACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || || || || | || | | || |||||| | |||| ||| ||||||||||| Sbjct 465 TATTCAGCTCCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGA 406 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 ||| ||||||||||||||||| || ||||| ||||| |||||||||||| |||||||| Sbjct 405 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTATTC 346 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 || || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || Sbjct 345 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 286 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAG 176742 || || || || ||| | ||||| || | || | |||| | | || || Sbjct 285 GGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTCTAGTTTGATCAGGGAA 226 Query 176743 ACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATAC 176802 || || ||||| ||||| || | ||||||||||| || ||||| ||||| || || Sbjct 225 ACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTAT 166 Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862 || |||||||| || || ||||| ||||| || || |||||||| | |||| |||||| Sbjct 165 AATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATTTGCTAGTTTCAAC 106 Query 176863 AACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACT 176922 ||||| | | ||||||||||| || || | || || || | |||| ||| ||| Sbjct 105 AACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTAGTTCACT 46 Query 176923 GCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAA 176966 || | ||| || |||| ||||| |||||| | ||||||||||| Sbjct 45 GCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 342 bits (378), Expect = 6e-89 Identities = 477/666 (72%), Gaps = 11/666 (2%) Strand=Plus/Minus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||||||||| | | ||||||||||||| | || || ||||| ||||||| ||| Sbjct 1472 TTACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGT 1413 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || | | | || || | | |||||| | |||| | ||||||| Sbjct 1412 TGCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTTTTCTTAATCTACCAGATCGGTCA 1353 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618 |||| ||| ||||||||||||||||| || ||||| ||||| |||||||||||| |||| Sbjct 1352 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGT 1293 Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGT 176678 |||||| || |||||||||| || ||||||||||| || ||| | || ||||| ||||| Sbjct 1292 ATTCCAGGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 1233 Query 176679 GTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAG 176738 || || || || | ||| || ||| | || |||| |||||| | |||| Sbjct 1232 ATTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCCTTTGTAACTTCTAGTTTGATTAG 1173 Query 176739 AGAGACAACCGAAAACGAATCACAAAACT-ACGGTTACAAATTCGGACAAGAAGAAGAGA 176797 || || || ||||| ||||| || | | | |||||||||| || ||||| ||||| | Sbjct 1172 GGAAACCACAGAAAATGAATC-CACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAAA 1114 Query 176798 CATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTT 176857 | || || |||||||| || || ||||| |||||||| || |||||||| ||| || || Sbjct 1113 CTTATAATATTGTAGCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGTT 1054 Query 176858 TCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGT 176917 |||| ||||| | | ||||||||||| || | | || || | | ||| || Sbjct 1053 TCAACAACTCTCGTTCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAGT 994 Query 176918 TTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGT 176977 | ||| | | ||| || || |||| |||||| | |||| |||||| |||||||| | Sbjct 993 TCACTACTTTAGGTATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAAT 934 Query 176978 CT----GTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGT 177033 || | ||| ||| | | || ||| ||| | || |||||| | || ||| Sbjct 933 CTATAGTTGATAGCCAAGGCCGTTA-----ATTAATACTTAGGCTGATATCATCAATCGT 879 Query 177034 GCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTT 177093 || ||||||||||||||||||||||| || | ||||||| |||||||| || || | Sbjct 878 GCTAACCTTGGTATGGAAGTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGATTTA 819 Query 177094 GCTGCT 177099 |||||| Sbjct 818 GCTGCT 813 >seq492030 Length=881 Score = 309 bits (342), Expect = 4e-79 Identities = 331/435 (76%), Gaps = 2/435 (0%) Strand=Plus/Plus Query 176548 CCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607 ||| ||||||||||| ||| ||||||||||||||||| || ||||| ||||| |||||| Sbjct 395 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 454 Query 176608 TTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGA 176667 |||||| |||||||| | || ||||||||||| || ||||||||||| || ||| | || Sbjct 455 TTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 514 Query 176668 GTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTA-CTTC 176726 ||||| ||||| || || || || || ||| || ||||| | | |||| || |||| Sbjct 515 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG-ATTCCTTGGTAACTTC 573 Query 176727 TTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACA 176786 | | | || || || || ||||| ||||| || | ||||||||||| || || Sbjct 574 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 633 Query 176787 AGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCA 176846 ||| ||||| || || || |||||||| || || ||||| ||||| || || |||||||| Sbjct 634 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 693 Query 176847 GTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGT 176906 |||||| |||||| ||||| | | ||||||||||| || || | || || || Sbjct 694 ATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 753 Query 176907 TTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAA 176966 | |||||||| ||||| | ||| || |||| ||||| |||||| | ||||||||||| Sbjct 754 GGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAA 813 Query 176967 CTTCAACCAGTCTGT 176981 |||||||| ||||| Sbjct 814 TTTCAACCAATCTGT 828 >seq567144 Length=1974 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 176921 CTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTG 176980 |||| | ||| || |||| ||||| |||||| | ||||||||||| |||||||| |||| Sbjct 177 CTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTG 236 Query 176981 TCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACC 177040 | | || | || || ||| ||| |||| |||||| | || ||||| |||| Sbjct 237 TAGTTGATAGTCAAGGCCGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACC 296 Query 177041 TTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 ||||||||||||||||||| || ||||||||||| |||||||| || || | |||||| Sbjct 297 TTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATTTAGCTGCT 355 >seq572160 Length=4591 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 176647 CACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATG 176706 |||||||| || ||| | || ||||| ||||| || || || || || ||| | ||| Sbjct 4222 CACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATG 4281 Query 176707 CACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAAC 176766 || || | || |||||| | | || || || | ||||| ||||| || Sbjct 4282 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAAT 4341 Query 176767 TACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTAC 176826 | ||||||||||| || ||||| ||||| || || | |||||||| || || ||||| Sbjct 4342 GAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAGTATTGTAGCCGCTCATGGTTAT 4401 Query 176827 TTTGGTCGTCTTATCTTCCAGTATGCT 176853 ||||| | || |||||||| |||||| Sbjct 4402 TTTGGCCAACTGATCTTCCAATATGCT 4428 >seq572830 Length=4883 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||| ||||| || | ||||||||||| || ||||| ||||| Sbjct 750 AGGGAAACCACAGAAAATGAATCCACTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAA 691 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCA 176846 || || || |||||||| || || ||||| ||||| || || |||||||| Sbjct 690 ACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597502545500160