Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq621678 107 1e-18 seq564812 105 5e-18 seq564810 98.7 7e-16 seq690132 96.9 2e-15 seq500796 96.9 2e-15 seq502676 86.0 4e-12 >seq621678 Length=9740 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| || ||||| ||| |||| | || || || ||| || Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTCC 704 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||| | || ||| ||||| ||||||||||| |||| || Sbjct 703 GAC-----ACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGG 649 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||| || ||||||||||| || | | | | ||| | |||| Sbjct 648 ATCAGCAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATT 589 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| ||||| ||| ||||||||||||||| Sbjct 588 ACAACATTCAAAAGGAGTCCACTTTGCATTTGGT 555 >seq564812 Length=421 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||||||||| || ||||| | || || || ||| || Sbjct 39 ATGCAGATTTTCGTCAAAACTCTTACTGGCCAAACAATTACGCTGGAAGTTGAGAGCTCC 98 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| | ||||||||||| |||| ||| | Sbjct 99 GACACAATTGATAAT--GTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATC 156 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||| ||||||| | | | | | ||| | ||||| Sbjct 157 AGCAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACA 216 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| ||||| ||| ||||||||||||||| Sbjct 217 ACATTCAAAAGGAGTCCACTTTGCATTTGGT 247 >seq564810 Length=1937 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||| ||||| || ||||| | || | || ||| || Sbjct 488 ATGCAGATTTTCGTCAAAACTCTAACTGGCCAAACAATTACGCTGGAAGGTGAGAGCTCC 547 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||| | || ||| ||||| | ||||||||||| |||| || Sbjct 548 GAC-----ACAATTGATAACGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGG 602 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||| || ||| ||||||| | | | | | ||| | | || Sbjct 603 ATCAGCAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGGGTT 662 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| ||||| ||| ||||||||||||||| Sbjct 663 ACAACATTCAAAAGGAGTCCACTTTGCATTTGGT 696 >seq690132 Length=1697 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || |||||||| | ||| ||| ||||| | || || || ||| || Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||||||||| |||| | | | Sbjct 895 GACACAATTGATAAT--GTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATC 952 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || | ||| || ||||||||||| | ||| | ||| | ||||||| Sbjct 953 AGCAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACA 1012 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||| ||||| ||| ||||||||||||||| Sbjct 1013 GCATTCAAAAGGAGTCCACTTTGCATTTGGT 1043 >seq500796 Length=7474 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||| ||||||||||| || |||||| | || || |||||| | Sbjct 2337 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACACTGGAAGTTGAAAGCTC 2396 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| ||||| ||||| ||||||||||| | || || Sbjct 2397 AGATACAATAGACAAT--GTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCAGAC 2454 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA-CGAACGCAGCTTGTCCGATTA 27965 |||||| | || || || || || |||||| | || || ||| | |||| | ||||| Sbjct 2455 CAGCAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGGACACTTG-CAGATTA 2513 Query 27966 CAACATCCAAAAAGA 27980 ||||||||||||||| Sbjct 2514 CAACATCCAAAAAGA 2528 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| ||||||||||| ||| ||||| | || || || ||| | Sbjct 2110 ATGCAAATTTTTGTGAAGACTCTTACTGGAAAAACAATTACTCTCGAGGTTGAGAGCTCA 2169 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| |||||| ||| || || || |||||| |||| || | Sbjct 2170 GATACCATTGACAAT--GTCAAAGCAAAGATCCAGGATAAGGAAGGTATTCCTCCTGACC 2227 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | || ||||| || || ||| | || || | || | | | | ||||||| Sbjct 2228 AGCAGAGACTGATCTTTGCTGGGAAGCAACTTGAAGATGGCCGTACCCTTGCTGATTACA 2287 Query 27968 ACATCCAAAAAGA 27980 | |||||||| || Sbjct 2288 ATATCCAAAAGGA 2300 >seq502676 Length=6550 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || || || ||| ||||| | || || || ||| || Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCC 1136 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||| | || ||| ||||| ||||||||||| |||| | Sbjct 1137 GAC-----ACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAG 1191 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || ||||| || ||||||||||| |||| | | || | |||| Sbjct 1192 ATCAGCAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATT 1251 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | ||||| ||| ||||||||| | || | | ||||||| || Sbjct 1252 ACAACGTTCAAAAGGAGTCGACTTTGCATCTTGTCCTTAGGCTGCGTGGTGG 1303 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || |||||||| || ||| || || | || || || || | Sbjct 849 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAAACGATCACTCTGGAGGTTGAGAGTTCT 908 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| ||||| |||||| ||||| ||||| |||||| |||| || | Sbjct 909 GATACGATCGACAAT--GTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATC 966 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| ||||| || || |||||| |||| || | | | | | ||||||||| Sbjct 967 AGCAGCGGTTGATTTTCGCTGGGAAACAACTGGAGGATGGTAGAACCCTAGCCGATTACA 1026 Query 27968 ACATCCAAAAAGA 27980 |||| || || || Sbjct 1027 ACATTCAGAAGGA 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352417514960976