Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq621678 111 1e-19 seq502676 91.5 1e-13 seq361176 82.4 6e-11 >seq621678 Length=9740 Score = 111 bits (122), Expect = 1e-19 Identities = 157/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| ||| ||||| | || ||||| ||||| |||||| | || || Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| |||||||||||||| || | ||| || || |||||| | || |||||||||| | Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGG-ATGCCCTCTTTGTCC-T 444 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || ||||| | | | || || ||| |||||| |||| || || Sbjct 445 GAATCTTTGCTTTGACATTATCAATAGTGTCAGAGCT---CTCCACCTCCAGAGTAATGG 501 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| ||||| ||||| || ||||| Sbjct 502 TTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || |||||||||||||| || || || |||| || ||||| Sbjct 1017 TGGAGCGTGGACTCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 1076 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || ||||||||||| |||| || | | || ||||| ||| || Sbjct 1077 TTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTG 1136 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | |||||| ||| || || | || || |||| || || Sbjct 1137 GCCTTGACGTTATCAATTGTATCGGAGCTCTCGACTTCGAGAGTTATGGTTTTGCCGGTG 1196 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTT 39288 || ||||| || ||||| ||||||||| Sbjct 1197 AGGGTTTTCACGAAGATCTGCATCTTT 1223 >seq502676 Length=6550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || ||||||||||||||||| || || || | || || ||||| Sbjct 595 TGGAGCGTGGACTCCTTCTGTATATTATAATCGGCGAGGGTCCGGCCATCCTCGAGCTGC 536 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || ||||||||||| |||| ||| | | || || ||| ||| || Sbjct 535 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCCTGGATCTTG 476 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | |||||| ||| || || | || || | || || || Sbjct 475 GCCTTGACATTATCTATGGTATCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTT 416 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 || ||||| || ||||| |||||| ||||| || Sbjct 415 AGGGTTTTGACGAAGATCTGCATCCTTACGGCG 383 >seq361176 Length=4428 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 ||||| || ||| || || || || || ||||| || || || | || || ||||| Sbjct 4234 TGTAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGC 4175 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || ||||||||||| || | || | || || |||||| ||| || Sbjct 4174 TTTCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTA 4115 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | |||||| || || || |||| || || | || ||||| Sbjct 4114 GCCTTGA-CGTTGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGT 4056 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| |||||||| Sbjct 4055 GAGGGTTTTGACGAAGATCTGCATCTT 4029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425387433216944