Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq502676 105 5e-18 seq621678 100 2e-16 seq690132 95.1 1e-14 seq382206 87.8 1e-12 seq564810 84.2 2e-11 seq564812 82.4 6e-11 >seq502676 Length=6550 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGT 101095 |||||||| || || ||||||| |||||||| |||| ||| | |||||||||||| Sbjct 1279 TGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGT 1220 Query 101096 TTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTT 101155 ||||| ||| |||| ||||| || || ||| || | |||||||||||| |||||| Sbjct 1219 TTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTG 1160 Query 101156 TGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTC 101215 |||||| | | | || || | | | ||| | ||||| ||||| || ||| Sbjct 1159 GCTTTCACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTC 1100 Query 101216 AATGTTTTAATAAAAATTTGCAT 101238 | ||||| | |||||| ||||| Sbjct 1099 AGGGTTTTGACAAAAATCTGCAT 1077 >seq621678 Length=9740 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || |||| |||| |||| |||||||| || || |||||||| |||||||| ||| Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | |||||||||||||||||| ||| | |||||||| || || || || Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 101132 ACGCCTTCTTTGTCGGCAATTTT 101154 | ||||||||||| |||||| Sbjct 657 ATTCCTTCTTTGTCCTGAATTTT 679 >seq690132 Length=1697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || |||| |||| |||| |||||||| || || |||||||| ||||||| ||| Sbjct 1061 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCC 1002 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||||| | |||||||||||||||| ||| | || ||||| || || | || Sbjct 1001 AAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGA 942 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||||||||| |||||| ||| |||| | | || || | | | | Sbjct 941 ATCCCTTCTTTGTCCTGAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACT 882 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||| |||||||| | | ||||| | ||||| ||||| Sbjct 881 TCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq382206 Length=6817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 101023 TCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA 101082 ||| || || | ||| | ||||||||||| || ||||||||||| |||| || | Sbjct 2743 TCTCAAAACAAGGTGAAGCGTTGATTCTTTCTGGATATTGTAATCTGCCAATGTCCTTCC 2684 Query 101083 ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTT 101142 ||| ||||| ||||| || ||| |||| ||||| || |||||| || | ||||||||| Sbjct 2683 ATCCTCCAACTGTTTTCCAGCAAATATCAGCCTCTGCTGGTCTGGTGGTATGCCTTCTTT 2624 Query 101143 GTC 101145 ||| Sbjct 2623 GTC 2621 >seq564810 Length=1937 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 |||| |||| |||||||| || || |||||||| |||||| | |||| ||| | | Sbjct 702 CTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAACCCGCCAAAGTCCTTCCA 643 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||||| |||||| ||| | || ||||| || || || || | ||||||||| Sbjct 642 ACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTG 583 Query 101144 TCGGCAATTTT 101154 || ||||||| Sbjct 582 TCCTCAATTTT 572 >seq564812 Length=421 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 |||| |||| |||||||| || || |||||||| |||||| |||| ||| | | Sbjct 253 CTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAAAGTCCTTCCA 194 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||||| |||||| ||| | || ||||| || || || || | ||||||||| Sbjct 193 ACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTG 134 Query 101144 TCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATA 101203 || ||||||| ||| |||| | | || || | | | ||| | ||||| Sbjct 133 TCCTCAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATT 74 Query 101204 GTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||| ||| || | ||||| | ||||| ||||| Sbjct 73 GTTTGGCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405695125736592