Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq548568 116 5e-21 seq405401 111 2e-19 seq551794 102 1e-16 seq154576 98.7 1e-15 >seq548568 Length=13427 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||| ||||||| ||| |||| ||||||||| || |||||| |||| |||| ||| Sbjct 5428 TCTCTCTCATATTTAGTGTATAAAGCTTCAAATTCCTCGCCCCAACAATCAGCCAACCCA 5369 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||||||| || | ||||||||| | |||| || ||||| | |||||| Sbjct 5368 GGAGATTCATTTGGACAAAACAATGACCACTGTCCATTGGACTGAACTCTCTCCATAAAT 5309 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 |||||||||||||| || ||| ||| | ||||| Sbjct 5308 AGATCAGGTATCCAGAGGGCATAAAACAAATCTC 5275 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | |||||| || |||| ||| | || | | |||||||| ||| || Sbjct 4775 ACCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCC 4716 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||| |||||||||||||| ||||||||||| |||| || ||||| | || Sbjct 4715 ATTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGA 4656 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| |||||||| || || || | ||| || || | ||| || || || Sbjct 4655 GACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATAT 4596 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| ||||||||||| ||||| || ||| |||||||| Sbjct 4595 GCCCTCAATACTGTCATCTTTCATGCATATTAAG-AAACAGCT 4554 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | || ||||| ||||| ||||||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | ||| |||| || || || | ||| ||||| || || | || | |||||| Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| |||||||| ||| | | || || | ||| ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||| |||| || ||| ||||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 >seq405401 Length=1294 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | |||||| || |||| ||| | || | | |||||||| ||| || Sbjct 646 ACCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCC 587 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||| || ||| |||||||| ||||||||||| |||| || ||||| | || Sbjct 586 ATTAGACGTCCCAGTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGA 527 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| |||||||| || || || ||||| || || | ||| || || || Sbjct 526 GACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCATATAT 467 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| ||||||||||| ||||| || ||| |||||||| Sbjct 466 GCCCTCAATACTGTCATCTTTCATGCATATTAAG-AAACAGCT 425 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||| ||||||| ||| |||| ||||||||| || |||||| |||| |||| ||| Sbjct 1283 TCTCTCTCATATTTAGTGTATAAAGCTTCAAATTCCTCGCCCCAACAATCAGCCAACCCA 1224 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||||||| || | ||||||||| | |||| | ||||| | |||||| Sbjct 1223 GGAGATTCATTTGGACAAAACAATGACCACTGTCCATAGGACCGAACTCTCTCCATAAAT 1164 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 |||||||||||||| || ||| ||| | ||||| Sbjct 1163 AGATCAGGTATCCAGAGGGCACAAAACAAATCTC 1130 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | || |||| ||||| ||||||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | ||| |||| || || ||| | ||| ||||| || || | || | |||||| Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| |||||||| ||| | | || || | ||| ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||| |||| || ||| ||||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 >seq551794 Length=11183 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||||||||| ||||||||| | || | ||||| Sbjct 4690 GTCCCAGCATTGAAAAGCGTGGGAGATGCATGAGTAAACCATCGCTGGGACAATAGATGA 4749 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || |||| || ||||| | ||| || | || || || || | |||||| Sbjct 4750 TATGTTTGTATTACTGAATCAATGTCATCCTTG-TGGACGCCAACAGCAACTCTCATCAA 4808 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| |||||||| || ||| || || | | || || |||| | Sbjct 4809 CATGTGCTGAGGCCTTTCAACAACTTTCCCATTAATCTTTAGGAGATAAGACCTTTCAAG 4868 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||| |||| || ||||||||| || || || || Sbjct 4869 GGTTTTAAAACCAAAGTAGTCATAGTCAAAGTCTCTGTCATATATTAT 4916 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || |||| ||| | |||| | ||| |||| ||| || Sbjct 4335 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGAAGCATCGGAACAATGCC 4394 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||||||||||||||||||| || || ||||| | || ||||| ||| | || Sbjct 4395 ATTAGATGTTCCATTTGTTCCACGTATGTAGCTTCCTGTAGCACGAATGTTATGAGCAGA 4454 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || || | ||| || |||| |||||| || || Sbjct 4455 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAGTGTATCATATAT 4514 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| || || || ||| ||||| || ||| |||||||| Sbjct 4515 GCCCTCAATGCTATCCTCCTTCATGCATATCAAG-AAACAGCT 4556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 || |||||||| || | ||||||||| | |||||| |||| | | ||| || Sbjct 3847 TCGTATTGAGTGTACAAAGCTTCAAATTCTTTGCCCCAACAATCAGCTAGTCCTGGAGTC 3906 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | ||||||||| | |||| | ||| | || |||||| |||||| Sbjct 3907 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGAACCCTTTGCATAAACAGATCA 3966 Query 78024 GGTATCCATAGAGCAATAAATAGATCTC 78051 ||||||||||||||| ||||| ||||| Sbjct 3967 GGTATCCATAGAGCATAAAATAAATCTC 3994 >seq154576 Length=476 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | |||||| || |||| ||| | || | | |||||||| ||| || Sbjct 386 ACCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCC 327 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||| | ||| |||||||| ||||||||||| |||| || ||||| | || Sbjct 326 ATTAGACATCCCAGTTGTTCCACGGATATAACTTCCCTTTGCACGGATATTGTGTACAGA 267 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||| |||||||| || || || ||||| || || | ||| || | || Sbjct 266 GACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCAAATAT 207 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| |||||| |||| ||||| || ||| |||||||| Sbjct 206 GCCCTCAATACTGCCATCTTTCATGCATATTAAG-AAACAGCT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687771711352320