Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq405401 143 4e-29 seq548568 138 2e-27 seq154576 129 8e-25 seq551794 125 1e-23 >seq405401 Length=1294 Score = 143 bits (158), Expect = 4e-29 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | |||||| ||||||| ||| | || | | |||||||| |||||| Sbjct 646 ACCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCC 587 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||||| || ||| |||||||| ||||||||||| |||||| ||||| | ||| Sbjct 586 ATTAGACGTCCCAGTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGA 527 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| |||||||| || | ||||||||| || Sbjct 526 GACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCATATAT 467 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| ||||| ||||| ||||| || ||| |||||||| Sbjct 466 GCCCTCAATACTGTCATCTTTCATGCATATTAAG-AAACAGCT 425 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||| ||||||| || ||||| ||||||||| || |||||| |||| |||| ||| Sbjct 1283 TCTCTCTCATATTTAGTGTATAAAGCTTCAAATTCCTCGCCCCAACAATCAGCCAACCCA 1224 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| ||||||| ||||| | ||||||||||| |||| | ||| | | |||||| Sbjct 1223 GGAGATTCATTTGGACAAAACAATGACCACTGTCCATAGGACCGAACTCTCTCCATAAAT 1164 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||||||||||| || ||| ||| | ||||| Sbjct 1163 AGATCAGGTATCCAGAGGGCACAAAACAAATCTC 1130 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || |||| |||||||| |||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | ||||||| || |||||| | ||| ||||| || |||| || | |||||| Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| | | || || | ||| ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||||||||| |||| || ||| ||||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 >seq548568 Length=13427 Score = 138 bits (152), Expect = 2e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | |||||| ||||||| ||| | || | | |||||||| |||||| Sbjct 4775 ACCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCC 4716 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||||| | |||||||||||| ||||||||||| |||||| ||||| | ||| Sbjct 4715 ATTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGA 4656 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| | |||||| || | ||||||||| || Sbjct 4655 GACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATAT 4596 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| ||||| ||||| ||||| || ||| |||||||| Sbjct 4595 GCCCTCAATACTGTCATCTTTCATGCATATTAAG-AAACAGCT 4554 Score = 120 bits (132), Expect = 4e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||| ||||||| || ||||| ||||||||| || |||||| |||| |||| ||| Sbjct 5428 TCTCTCTCATATTTAGTGTATAAAGCTTCAAATTCCTCGCCCCAACAATCAGCCAACCCA 5369 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| ||||||| ||||| | ||||||||||| |||| || ||| | | |||||| Sbjct 5368 GGAGATTCATTTGGACAAAACAATGACCACTGTCCATTGGACTGAACTCTCTCCATAAAT 5309 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||||||||||| || ||| ||| | ||||| Sbjct 5308 AGATCAGGTATCCAGAGGGCATAAAACAAATCTC 5275 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| |||||||| |||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | ||||||| || ||||| | ||| ||||| || |||| || | |||||| Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| | | || || | ||| ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||||||||| |||| || ||| ||||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 >seq154576 Length=476 Score = 129 bits (142), Expect = 8e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | |||||| ||||||| ||| | || | | |||||||| |||||| Sbjct 386 ACCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCC 327 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 ||||| | ||| |||||||| ||||||||||| |||||| ||||| | ||| Sbjct 326 ATTAGACATCCCAGTTGTTCCACGGATATAACTTCCCTTTGCACGGATATTGTGTACAGA 267 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| |||||||| || | ||||||| | || Sbjct 266 GACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCAAATAT 207 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| ||||| |||| ||||| || ||| |||||||| Sbjct 206 GCCCTCAATACTGCCATCTTTCATGCATATTAAG-AAACAGCT 165 >seq551794 Length=11183 Score = 125 bits (138), Expect = 1e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||||| ||| | |||| | ||| |||| |||||| Sbjct 4335 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGAAGCATCGGAACAATGCC 4394 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 |||||||| |||||||||||| || || ||||| |||||||| ||| | ||| Sbjct 4395 ATTAGATGTTCCATTTGTTCCACGTATGTAGCTTCCTGTAGCACGAATGTTATGAGCAGA 4454 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| | |||||| |||| ||| ||||| || Sbjct 4455 AACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAGTGTATCATATAT 4514 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| || ||||| ||| ||||| || ||| |||||||| Sbjct 4515 GCCCTCAATGCTATCCTCCTTCATGCATATCAAG-AAACAGCT 4556 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || |||||||||||||| |||||| | || | ||||| Sbjct 4690 GTCCCAGCATTGAAAAGCGTGGGAGATGCATGAGTAAACCATCGCTGGGACAATAGATGA 4749 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || |||| || || || | ||| || | || ||||| || | |||||| Sbjct 4750 TATGTTTGTATTACTGAATCAATGTCATCCTTG-TGGACGCCAACAGCAACTCTCATCAA 4808 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| || ||| || || | | || || |||| | Sbjct 4809 CATGTGCTGAGGCCTTTCAACAACTTTCCCATTAATCTTTAGGAGATAAGACCTTTCAAG 4868 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||||||||| |||| || ||||||||| || || || || Sbjct 4869 GGTTTTAAAACCAAAGTAGTCATAGTCAAAGTCTCTGTCATATATTAT 4916 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 || ||||| || || || ||||||||| | |||||| |||| | | || ||| Sbjct 3847 TCGTATTGAGTGTACAAAGCTTCAAATTCTTTGCCCCAACAATCAGCTAGTCCTGGAGTC 3906 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | ||||||||| | |||| | ||||| || |||||| |||||| Sbjct 3907 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGAACCCTTTGCATAAACAGATCA 3966 Query 76619 GGTATCCATAGAGCAATAAATAGATCTC 76646 ||||||||||||||| ||||| ||||| Sbjct 3967 GGTATCCATAGAGCATAAAATAAATCTC 3994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705855959516160