Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq621678 116 3e-21 seq690132 107 2e-18 seq502676 107 2e-18 seq500796 107 2e-18 seq564810 93.3 4e-14 seq564812 89.7 4e-13 seq693518 87.8 1e-12 >seq621678 Length=9740 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| | || |||||||| |||| ||||| || | | Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTCC 704 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| |||||| ||||||||||| |||| ||||| Sbjct 703 GACACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGGATCAG 644 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| |||||||||||||||||| | ||| |||| ||||| || Sbjct 643 CAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTACAAC 584 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || || | ||||| || | | ||||||||||| Sbjct 583 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| || ||||||||||| |||| ||| | Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || ||| ||| ||| |||||||| ||| | || |||||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAA 416 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||||||||| || | || ||| ||| | || ||||| || Sbjct 415 CAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAAC 356 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | ||||| || || || || ||||| || | || || || ||||| Sbjct 355 GTTCAAAAGGAGTCCACTCTGCATTTGGTTCTTCGCCTTCGTGGTGG 309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||| ||||| |||| ||||||||| || | |||| || |||||||||||||| Sbjct 898 GACAAGGAAGGTATTCCACCCGATCAACAGAGATTGATTTTCGCTGGCAAACAATTGGAG 839 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | ||| | |||||||| ||||| || || ||||| || ||||| | || | Sbjct 838 GATGGCAGAACCCTAGCCGATTACAATATCCAGAAGGAATCCACTTTACATCTCGTCCTC 779 Query 111313 CGTCTGCGCGGTGG 111326 | ||||||||||| Sbjct 778 AGGCTGCGCGGTGG 765 >seq690132 Length=1697 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| | | |||||||| ||||| ||||| || | | Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| |||||| ||||||||||| |||| |||| Sbjct 895 GACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAG 954 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| |||||||||||||||| | |||||| |||| ||||| | Sbjct 955 CAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGC 1014 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || || | ||||| || | | ||||||||||| Sbjct 1015 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 1061 >seq502676 Length=6550 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| ||||||| ||||| ||||| ||||| || | | Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCC 1136 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| |||||||||||| |||| ||||| Sbjct 1137 GACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 1196 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| ||||||||||||||||| | ||| |||| ||||| || Sbjct 1197 CAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAAC 1256 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | ||||| || || || | ||| | || | | ||||| ||||| Sbjct 1257 GTTCAAAAGGAGTCGACTTTGCATCTTGTCCTTAGGCTGCGTGGTGG 1303 >seq500796 Length=7474 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| ||||| | ||||| |||||||| || |||| || | | Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | | || || || ||| || || ||||| |||| ||||| Sbjct 1714 GATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAG 1773 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||||| ||| || || ||| | |||||| || |||| | || ||||| ||| Sbjct 1774 CAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAAT 1833 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || |||||||||||||| || ||| | || | || || || ||||||| Sbjct 1834 ATTCAAAAAGAATCTACCCTCCATCTTGTCCTCCGACTTCGTGGTGGCA 1882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| ||||| || ||||| || || |||| || | Sbjct 2794 ATGCAAATATTTGTCAAAACTTTGACTGGGAAAACAATCACTTTGGAGGTTGAGAGCTCA 2853 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 ||| | ||| | || || ||||||| ||||| ||||| | |||| | ||||| Sbjct 2854 GATACAATTGATAATGTGAAGGCAAAAATTCAAGACAAGGAAGG-GATCCCACCGGATCA 2912 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | || |||| ||| || || || | |||||| ||| |||| ||||| || Sbjct 2913 ACAACGCCTCATTTTTGCTGGGAAGCAGCTTGAAGATGGACGCACTCTGGCAGATTACAA 2972 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 ||| || || || || || || || | || | ||||| || ||||||| Sbjct 2973 TATCCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGTCTTCGTGGTGGCA 3022 >seq564810 Length=1937 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| | || ||| |||| ||||| ||||| || | | Sbjct 488 ATGCAGATTTTCGTCAAAACTCTAACTGGCCAAACAATTACGCTGGAAGGTGAGAGCTCC 547 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||||| ||||||||||| |||| ||||| Sbjct 548 GACACAATTGATAACGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCAG 607 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| |||||| ||||||||| | | ||| |||| | ||| || Sbjct 608 CAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGGGTTACAAC 667 Query 111280 ATACAAAAAGAATCTACACTACATTTAGT 111308 || ||||| || || || | ||||| || Sbjct 668 ATTCAAAAGGAGTCCACTTTGCATTTGGT 696 >seq564812 Length=421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| | || ||| |||| ||||| ||||| || | | Sbjct 39 ATGCAGATTTTCGTCAAAACTCTTACTGGCCAAACAATTACGCTGGAAGTTGAGAGCTCC 98 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | |||||| ||||||| ||||||||||| |||| ||||| Sbjct 99 GACACAATTGATAATGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCAG 158 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| |||||| ||||||||| | | ||| |||| ||| || Sbjct 159 CAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACAAC 218 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || || || | ||||| || | | ||| |||||| Sbjct 219 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGATGCCCGGTGG 265 >seq693518 Length=857 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || |||||||| || | ||||||||||| || ||| | || ||| | Sbjct 521 ATGCAGATCTTTGTCAAGACCCTAACCGGCAAAACGATCACCCTAGAGGTTGAATGCTCT 580 Query 111160 GATTCTGTTGGC-CAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| ||| | || ||||| |||||| || || ||||| | || |||||| Sbjct 581 GATATGATTGACAAAGTTAAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCCGATCA 640 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| || | |||| || ||||| |||||||| ||| | ||| | |||||||| || Sbjct 641 ACAGAGATTGATTTTCGCTGGCAAGCAATTGGAGGATGGCAGAACCCTAGCCGATTACAA 700 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||| ||||| | |||||| | || | | || |||||||| Sbjct 701 TATCCAAAAGGAATCCGCTCTACATCTCGTCCTCAGCCTCCGCGGTGG 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417727905186688