Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 5e-23
seq34 98.7 2e-15
seq25 98.7 2e-15
seq7 98.7 2e-15
seq6 98.7 2e-15
seq5 98.7 2e-15
seq4 98.7 2e-15
seq3 98.7 2e-15
seq1 98.7 2e-15
seq401 95.1 3e-14
seq22 84.2 5e-11
>seq2
Length=13294645
Score = 123 bits (136), Expect = 5e-23
Identities = 585/906 (65%), Gaps = 39/906 (4%)
Strand=Plus/Plus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | |||||| |||||||| || | || ||||| |||||||||||||| | |||
Sbjct 9186149 TTCTGTATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCA 9186208
Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGC-AGAC-GTCGTCGACTGGCGTGAGA 229867
|||||||||| | || ||||| ||| ||| |||| |||| ||||||| ||||
Sbjct 9186209 TCTTTCTGGACGGCCGAAGAAGTCGATCT-TTCGCAAGACGGTCG-CGACTGG---GAGA 9186263
Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927
| || || |||| |||||| || |||||||||||| | || | || ||||| | ||| |
Sbjct 9186264 ATCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAG 9186323
Query 229928 ATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 229985
| || || || |||| ||||| || || | |||| ||| || || || | ||
Sbjct 9186324 ACGGAATCGTTCTGGAGAATCTCGCTTCCCGA-TTTA-TGTCCGATGTGCAAGTCTCGGA 9186381
Query 229986 GGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAAT 230041
||| || || || | || ||| | ||| | ||| || || || || |
Sbjct 9186382 GGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGA--GAA--CATACACTCCGAGATGT 9186437
Query 230042 ATGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTTTTGA 230099
| ||| || |||| | |||| || ||| | |||| | || | || ||
Sbjct 9186438 ACAGTCTCCTCCTCGA--CACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCG 9186495
Query 230100 TGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGA 230159
|| || |||| |||||| || || || || ||||||| ||| ||| | ||
Sbjct 9186496 CGCGATCGAAACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGA 9186555
Query 230160 ACCTGG---TAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCT 230216
||| | | | ||||||||| | ||||||| | | ||||| |||||||| |
Sbjct 9186556 ---TGGATCTCAGACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTT 9186612
Query 230217 GTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT 230276
|| ||||| || |||||| | || || |||||| || |||| | ||||| || |
Sbjct 9186613 CTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATT 9186672
Query 230277 CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-C 230335
| || |||||||| ||| || ||||| || | ||| | ||| ||| | |
Sbjct 9186673 AACCTTCTCCAACGAGTTGATCTCACGAGACGAAGGCTTACATTGCGATTTC-GCGTGCC 9186731
Query 230336 TTATGTATTCAAAGCTC---CAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTA 230392
| || || | |||| || ||||| | ||| || || |||| |
Sbjct 9186732 TGATCTA---CACGCTCTTGTGGACGAAGCTCTCCGAGGAGCGCGTGAAGTCAATCGTCT 9186788
Query 230393 CAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATT 230451
|| || || || | ||| | |||||| | || ||||| | || || ||| || |
Sbjct 9186789 GCGACGCCGTCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTG-CGCGTTGGTA 9186847
Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511
|| |||||| ||| || ||| | |||||||| || || || || || | |||| |
Sbjct 9186848 GGGATGAACAGTGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGG 9186907
Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571
|| || || |||| || |||||| || || |||| | |||||| | ||
Sbjct 9186908 GCGCTCGGGTACGGTAAGGTGTACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATC 9186967
Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631
|||||||| ||||| || ||||||||||| ||| | || | || || || | | || |
Sbjct 9186968 TCGCTTCAGGGGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCAAAAGGCTTCT 9187027
Query 230632 GTGATG 230637
|| |||
Sbjct 9187028 GTTATG 9187033
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8439525 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8439466
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8439465 CCCACGGTGGGC 8439454
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 486836 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 486893
Query 165318 GTTGG 165322
|||||
Sbjct 486894 GTTGG 486898
>seq34
Length=94207
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 84552 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84493
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 84492 CCCACGGTGGGC 84481
>seq25
Length=107011
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 65620 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65679
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 65680 CCCACGGTGGGC 65691
>seq7
Length=17055980
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 7716094 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7716153
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 7716154 CCCACGGTGGGC 7716165
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 10515059 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10515000
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 10514999 CCCACGGTGGGC 10514988
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 10537765 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10537824
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 10537825 CCCACGGTGGGC 10537836
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 11620186 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11620127
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 11620126 CCCACGGTGGGC 11620115
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 261019 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 261076
Query 165318 GTTGG 165322
|||||
Sbjct 261077 GTTGG 261081
>seq6
Length=18523719
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2233997 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2233938
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2233937 CCCACGGTGGGC 2233926
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 14025288 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14025229
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 14025228 CCCACGGTGGGC 14025217
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 17715211 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17715270
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 17715271 CCCACGGTGGGC 17715282
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 39280 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 39339
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 39340 CCCACGGTGGGC 39351
>seq5
Length=16150104
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 5903528 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5903469
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 5903468 CCCACGGTGGGC 5903457
Score = 86.0 bits (94), Expect = 1e-11
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771
|||||||||||||| |||||||| | || || |||| || ||||||||||||||||||||
Sbjct 4406536 CCGTCTAGCTCAGTTGGTAGAGCTCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 4406477
Query 165772 CACGATGGGC 165781
|||| ||||
Sbjct 4406476 CACGGGGGGC 4406467
>seq4
Length=14320061
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6920147 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6920088
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6920087 CCCACGGTGGGC 6920076
>seq3
Length=15215380
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2183282 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2183341
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2183342 CCCACGGTGGGC 2183353
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 5201762 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5201821
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 5201822 CCCACGGTGGGC 5201833
>seq1
Length=19836964
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 132927 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 132986
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 132987 CCCACGGTGGGC 132998
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6489380 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6489439
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6489440 CCCACGGTGGGC 6489451
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 576094 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 576153
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 576154 CCCACGGTGGGC 576165
>seq401
Length=16829
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||| |
Sbjct 1042 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 1101
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1102 CCCACGGTGGGC 1113
>seq22
Length=113999
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 68739 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 68796
Query 165318 GTTGG 165322
|||||
Sbjct 68797 GTTGG 68801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057804252739910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |