Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 123 5e-23 seq34 98.7 2e-15 seq25 98.7 2e-15 seq7 98.7 2e-15 seq6 98.7 2e-15 seq5 98.7 2e-15 seq4 98.7 2e-15 seq3 98.7 2e-15 seq1 98.7 2e-15 seq401 95.1 3e-14 seq22 84.2 5e-11 >seq2 Length=13294645 Score = 123 bits (136), Expect = 5e-23 Identities = 585/906 (65%), Gaps = 39/906 (4%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | |||||| |||||||| || | || ||||| |||||||||||||| | ||| Sbjct 9186149 TTCTGTATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCA 9186208 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGC-AGAC-GTCGTCGACTGGCGTGAGA 229867 |||||||||| | || ||||| ||| ||| |||| |||| ||||||| |||| Sbjct 9186209 TCTTTCTGGACGGCCGAAGAAGTCGATCT-TTCGCAAGACGGTCG-CGACTGG---GAGA 9186263 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | || || |||| |||||| || |||||||||||| | || | || ||||| | ||| | Sbjct 9186264 ATCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAG 9186323 Query 229928 ATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 229985 | || || || |||| ||||| || || | |||| ||| || || || | || Sbjct 9186324 ACGGAATCGTTCTGGAGAATCTCGCTTCCCGA-TTTA-TGTCCGATGTGCAAGTCTCGGA 9186381 Query 229986 GGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAAT 230041 ||| || || || | || ||| | ||| | ||| || || || || | Sbjct 9186382 GGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGA--GAA--CATACACTCCGAGATGT 9186437 Query 230042 ATGCTCTGCTTATCGACGCGCTTATTTC--CGACGAGCAAGAACGGAACGAGCTTTTTGA 230099 | ||| || |||| | |||| || ||| | |||| | || | || || Sbjct 9186438 ACAGTCTCCTCCTCGA--CACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCG 9186495 Query 230100 TGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGA 230159 || || |||| |||||| || || || || ||||||| ||| ||| | || Sbjct 9186496 CGCGATCGAAACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGA 9186555 Query 230160 ACCTGG---TAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCT 230216 ||| | | | ||||||||| | ||||||| | | ||||| |||||||| | Sbjct 9186556 ---TGGATCTCAGACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTT 9186612 Query 230217 GTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT 230276 || ||||| || |||||| | || || |||||| || |||| | ||||| || | Sbjct 9186613 CTTCTCCGGTAGCTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATT 9186672 Query 230277 CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-C 230335 | || |||||||| ||| || ||||| || | ||| | ||| ||| | | Sbjct 9186673 AACCTTCTCCAACGAGTTGATCTCACGAGACGAAGGCTTACATTGCGATTTC-GCGTGCC 9186731 Query 230336 TTATGTATTCAAAGCTC---CAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTA 230392 | || || | |||| || ||||| | ||| || || |||| | Sbjct 9186732 TGATCTA---CACGCTCTTGTGGACGAAGCTCTCCGAGGAGCGCGTGAAGTCAATCGTCT 9186788 Query 230393 CAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATT 230451 || || || || | ||| | |||||| | || ||||| | || || ||| || | Sbjct 9186789 GCGACGCCGTCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTG-CGCGTTGGTA 9186847 Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 || |||||| ||| || ||| | |||||||| || || || || || | |||| | Sbjct 9186848 GGGATGAACAGTGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGG 9186907 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || || || |||| || |||||| || || |||| | |||||| | || Sbjct 9186908 GCGCTCGGGTACGGTAAGGTGTACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATC 9186967 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 |||||||| ||||| || ||||||||||| ||| | || | || || || | | || | Sbjct 9186968 TCGCTTCAGGGGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCAAAAGGCTTCT 9187027 Query 230632 GTGATG 230637 || ||| Sbjct 9187028 GTTATG 9187033 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8439525 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8439466 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8439465 CCCACGGTGGGC 8439454 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 486836 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 486893 Query 165318 GTTGG 165322 ||||| Sbjct 486894 GTTGG 486898 >seq34 Length=94207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 84552 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84493 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 84492 CCCACGGTGGGC 84481 >seq25 Length=107011 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 65620 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65679 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 65680 CCCACGGTGGGC 65691 >seq7 Length=17055980 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7716094 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7716153 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7716154 CCCACGGTGGGC 7716165 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10515059 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10515000 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10514999 CCCACGGTGGGC 10514988 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 10537765 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10537824 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10537825 CCCACGGTGGGC 10537836 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11620186 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11620127 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11620126 CCCACGGTGGGC 11620115 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 261019 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 261076 Query 165318 GTTGG 165322 ||||| Sbjct 261077 GTTGG 261081 >seq6 Length=18523719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2233997 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2233938 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2233937 CCCACGGTGGGC 2233926 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14025288 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14025229 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14025228 CCCACGGTGGGC 14025217 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17715211 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17715270 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17715271 CCCACGGTGGGC 17715282 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 39280 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 39339 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39340 CCCACGGTGGGC 39351 >seq5 Length=16150104 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5903528 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5903469 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5903468 CCCACGGTGGGC 5903457 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||| | || || |||| || |||||||||||||||||||| Sbjct 4406536 CCGTCTAGCTCAGTTGGTAGAGCTCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 4406477 Query 165772 CACGATGGGC 165781 |||| |||| Sbjct 4406476 CACGGGGGGC 4406467 >seq4 Length=14320061 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6920147 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6920088 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6920087 CCCACGGTGGGC 6920076 >seq3 Length=15215380 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2183282 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2183341 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2183342 CCCACGGTGGGC 2183353 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5201762 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5201821 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5201822 CCCACGGTGGGC 5201833 >seq1 Length=19836964 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 132927 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 132986 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 132987 CCCACGGTGGGC 132998 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6489380 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6489439 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6489440 CCCACGGTGGGC 6489451 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 576094 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 576153 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 576154 CCCACGGTGGGC 576165 >seq401 Length=16829 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 1042 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 1101 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1102 CCCACGGTGGGC 1113 >seq22 Length=113999 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 68739 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 68796 Query 165318 GTTGG 165322 ||||| Sbjct 68797 GTTGG 68801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057804252739910