Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 167 2e-36 >seq2 Length=13294645 Score = 167 bits (184), Expect = 2e-36 Identities = 579/879 (66%), Gaps = 31/879 (4%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||||| ||| | || ||||| ||||| ||||| |||| || || || || Sbjct 9187019 TTTGGTAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATTAACT 9186960 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| ||||||| | | | ||| |||||| || | | | | Sbjct 9186959 CCATCCAATCAAACGGATTAGCCACACCGTACACCTTACCGTACCCGAGCGCCCCCAAAA 9186900 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||||| || ||||| || || || || | ||| | || | |||||| |||| | || Sbjct 9186899 GCCTATCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACCA-AC 9186841 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | ||| || || || || ||| || | ||| || | || || || | || Sbjct 9186840 GCGCACGGCAGCGCGTCGCACACAAACTCCCT-CTCGATCTCGACGGCGTCGCAGACGAT 9186782 Query 16912 --ACTAGCAACTCGTTCCTCGGACGGTGTA-TGTTTAAGATGTTTAAACATCAGACATGC 16968 ||| || || |||||||| | | | |||| | | | ||||| || || Sbjct 9186781 TGACTTC--ACGCGCTCCTCGGAGAGCTTCGTCCACAAGA-GCGTGTAGATCAGGCACGC 9186725 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||||||||||||| || ||||||| ||| | ||||| || || || || ||||| Sbjct 9186724 GAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGG 9186665 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| ||||| || || | ||| || |||| | ||| || || ||||| ||||| Sbjct 9186664 CATGAGACCTCGCTTTTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACC 9186605 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTC-GCG-TCTTTGTTACGAATC 17146 ||||| | || || |||| | || ||||| | ||| | | || | ||| || Sbjct 9186604 TTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGATCCAT----CGA-TC 9186550 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA- 17204 || ||| | |||||| |||||| | | |||| || ||||| || || | || Sbjct 9186549 CACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAG 9186490 Query 17205 --ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 || | ||||| ||| ||| | | || || || |||| ||| || |||||||| Sbjct 9186489 AGATGGTCTCTCTCTTTGTTGT----CCTTGATGTAAGTGTCGAGGAGGAGACTGTACAT 9186434 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTA 17321 ||||||||||||||||| || || ||||| || ||||| |||||| || || |||| | Sbjct 9186433 CTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGA 9186375 Query 17322 TTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 ||| || || || || ||||| || ||||| || ||||| ||||| ||| Sbjct 9186374 CTTGCACATCGGACATA-AATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCG 9186316 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCA 17439 ||||| || || | || || || ||||| | | |||| ||| | | ||| ||| Sbjct 9186315 GCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCG-CCGTCGTTTAGATTCTCCCA 9186257 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 ||| |||| || | ||| |||||||||| ||||| ||| || | ||||| Sbjct 9186256 GTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTT 9186197 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | ||| || | |||||| || ||||| Sbjct 9186196 CTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAA 9186158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517536174200760