Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq7 87.8 2e-12 >seq2 Length=13294645 Score = 161 bits (178), Expect = 1e-34 Identities = 402/600 (67%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 |||| || ||||||||||| |||| || ||||||| || || |||||||| || Sbjct 9186735 ATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAG 9186676 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247 || | ||||||||| || || |||||||| ||||| || || || ||| | | | || || Sbjct 9186675 GTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 9186617 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA-CCGGCGCTGT 24306 ||||| || ||||| || || || || | | ||| || || || | | | | Sbjct 9186616 GAAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGAT-C 9186558 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 ||| |||||||| ||||| | ||| ||||| || ||||| || || || || | Sbjct 9186557 CATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCG 9186498 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||||| || | | || || | || || | || || || | | ||||| | Sbjct 9186497 CGCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGT 9186438 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || ||||| ||||| || || || || ||||||||| | ||||| | Sbjct 9186437 ACATCTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCG 9186378 Query 24487 TAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | || || || ||| |||||| || | ||| || || |||||||| | Sbjct 9186377 AGACTTGCACATC-GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAG 9186319 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT 24604 || || || || || | ||| ||||| || || | | |||| | | || |||| || | Sbjct 9186318 GCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGT-TTAGATTCTC 9186260 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| || |||| || | ||| |||||||| | ||||| || ||||| || || Sbjct 9186259 CCAGTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGC 9186200 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 ||| || ||||| | |||||| | | ||||| || || || ||| ||||| | ||| Sbjct 9186199 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTGG 9186140 >seq7 Length=17055980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||||| ||| || | || ||||| || || || |||||| | ||| | || || Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | ||| || || || |||||| | ||| ||||| || || | || | ||| | Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||||||||| |||||||| | ||| | || | ||| | | ||| ||||| || | Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCA-CTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAA 15540345 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||| || ||||| || | ||| ||| || || || || || || Sbjct 15540344 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGATCATAGATGAT 15540296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710786845360