Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq762 82.4 7e-11 seq6 82.4 7e-11 >seq4 Length=14320061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29058 AAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT 29117 ||||||||| | || |||||||||||| || || ||||| || || ||||| |||||| Sbjct 10684937 AAAGAAGGTATACCACCAGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAAGAT 10684878 Query 29118 TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 | ||| | || |||||||| || ||||| || |||||||||||| |||| || Sbjct 10684877 GGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTGGTCTT 10684822 >seq762 Length=4953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || | || ||||| ||||| ||| ||| |||| | | Sbjct 369 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 310 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||| || || ||||| |||||| | || ||||| Sbjct 309 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 250 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || || || || |||| || | |||| ||||||||||||| Sbjct 249 CAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACAAC 190 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || |||||||| || || ||||| Sbjct 189 ATCCAGAAGGAGTCGACCCTTCA 167 >seq6 Length=18523719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || | || ||||| ||||| ||| ||| |||| | | Sbjct 1438505 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCT 1438446 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||| || || ||||| |||||| | || ||||| Sbjct 1438445 GACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATCAG 1438386 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || || || || |||| || | |||| ||||||||||||| Sbjct 1438385 CAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACAAC 1438326 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || |||||||| || || ||||| Sbjct 1438325 ATCCAGAAGGAGTCGACCCTTCA 1438303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/116 (77%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCC 29132 ||| ||||| ||||| ||||| || || ||||| ||||| ||| || | ||| || Sbjct 17514331 AGACCAACAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTT--GCG 17514388 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||||||||| || |||||| | ||||| || |||| || || Sbjct 17514389 GATTACAATATCCAGAAGGAATCAACCCTTCACCTTGTGTTGCGTCTACGTGGTGG 17514444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428328393957335