Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6 107 3e-18 seq3 105 1e-17 seq4 96.9 5e-15 seq1 89.7 8e-13 seq7 84.2 3e-11 >seq6 Length=18523719 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| | |||||||| ||||| || | ||| |||| ||| | Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| || | || || ||||| || || ||||| || || || || || Sbjct 17514506 -GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCA 17514564 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || || || || ||||| | |||||| |||| || || | || || || Sbjct 17514565 ACAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAA 17514624 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| || || || || ||| | || |||||| | ||| | || ||||| Sbjct 17514625 TATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTTCGTGGTGG 17514672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || |||||||||| || || ||| | ||| | || ||| Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTC- 17513820 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| || || ||||||||||| || || || || || || Sbjct 17513821 TGACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCA 17513880 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || || || || || |||| ||| |||| ||| | | || || || Sbjct 17513881 GCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACAA 17513940 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | |||||||| | ||| | |||| ||||| Sbjct 17513941 CATCCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTTAGAGGCGGTAT 17513991 >seq3 Length=15215380 Score = 105 bits (116), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || || || || ||| | ||| ||||| | Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| |||| | || || ||||||||||||||||| || | ||| || || Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCAAGATAAAGAAGGCATCCAACCGGACCAG 11243832 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG-AACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | || ||| |||| || |||| |||||||| Sbjct 11243833 CAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATAA 11243892 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| || ||| | || | ||| | ||| | || ||||| Sbjct 11243893 CATTCAGAAAGAGTCTACTCTTCACCTTGTTCTCCGTCTCCGTGGTGG 11243940 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | || ||||| || |||||||| || || | || |||| || | Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || |||| |||| ||| || |||||||| || ||||| || | || || | Sbjct 11243545 -GACACTGTTGATAATGTAAAGACA-AAGATTCAAGACAAGGAAGGGATCGCGCCGGACC 11243602 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 || | || | || || || || ||||| | |||||| |||| || | | |||||| | Sbjct 11243603 AATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACA 11243662 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| |||||||| | || | || || ||| | || ||||| || Sbjct 11243663 ACATCCAAAAGGAATCAACACTTCACCTTGTGTTGCGTCTTCGTGGTGGGAT 11243714 >seq4 Length=14320061 Score = 96.9 bits (106), Expect = 5e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 124635 AAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 ||||||||||||||||| |||||||||||||| || ||||| || || ||| | || ||| Sbjct 10684937 AAAGAAGGTATACCACCAGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAAGAT 10684878 Query 124695 AGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT-TTTACG 124753 | ||||| ||| ||||| || || || ||||| || ||| | || |||| || | | Sbjct 10684877 GGCCGAACCCTAGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTGGTCTTGAGG 10684818 Query 124754 TTTACGAGGTGG 124765 ||| ||||||| Sbjct 10684817 CTTA-GAGGTGG 10684807 >seq1 Length=19836964 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| || ||||||||||||||||| ||| | || ||||| || |||||| || Sbjct 10373875 CAGGACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAAACAACTA 10373816 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| ||| || || || || || ||||| || ||| | || ||||| Sbjct 10373815 GAAGATGGCCGAACGCTAGCGGACTACAACATCCAGAAAGAGTCGACTCTTCACTTGGTC 10373756 Query 124749 TT 124750 || Sbjct 10373755 TT 10373754 >seq7 Length=17055980 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| |||||||| | ||||||||||||||| | |||||||||||||||| | Sbjct 15010529 GCAATGTTAAACGGTACACCAAGACCCATATCAGCTGACCGCTGATACATTTGACATGAA 15010588 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | |||| ||| || |||| || || || || | |||| Sbjct 15010589 AGCTCTCCATTTGCA---ACATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCATC 15010645 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 | || || ||||||||| || | | ||||| || | ||||| || || Sbjct 15010646 AGCTTAAGGTCAGAAGGATTCCAAGCCGACATAATTATCCGTCGATCATCAGGATTGTTC 15010705 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722 || || || || || | || | | ||||||||||||||| ||||||| | || | Sbjct 15010706 TTGATCTTGTTGATCACATCTAAGAGCTGATCAAATCCTTGACCAGTATAATCGGCATGC 15010765 Query 205723 ATATC 205727 ||||| Sbjct 15010766 ATATC 15010770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442241257600