Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 1e-22
seq6 114 1e-20
seq5 114 1e-20
seq3 95.1 1e-14
seq4 86.0 7e-12
>seq1
Length=19836964
Score = 122 bits (134), Expect = 1e-22
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||||||||| | ||| | ||||| || | || |||||| || || |||||||| ||
Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| |||| | |||| || |||||||| || ||||| || || |||||||| || | |||
Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | |||||||| ||| || || | | | | ||||||| ||| || ||
Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187
|| | || || || || |||||||| || || ||||||||||||||||||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTTT 7691991
>seq6
Length=18523719
Score = 114 bits (126), Expect = 1e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| | ||||||||| | ||| ||| || || || ||||| |||||
Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || |||||||||||||| ||||| || || | ||||||||| | ||
Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133
| | ||| || || ||| ||| ||||| | | | ||||| |||| ||
Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCG 17513812
Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||| |||||||| ||||| |||| || || ||||||||||||||
Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||||||||| || |||||||| || || || || |||| || ||||| || || || ||
Sbjct 17514181 CTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAA 17514122
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110
||||||| ||||||||| | || | | ||||||||| ||| | || | ||||
Sbjct 17514121 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTCGCCTTGACGT 17514063
Query 43111 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | ||||| ||| || || || | ||||||||||||||||| || ||||
Sbjct 17514062 TATCGATTGTGTCTGAACTC---TCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCT 17514006
Query 43168 TTACAAAGATTTGCAT 43183
| ||||| || |||||
Sbjct 17514005 TGACAAAAATCTGCAT 17513990
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||| | || ||| || || ||||||||||||||||| || || | || ||
Sbjct 1438004 ACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCCTCG 1438063
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069
|||||||| |||||||| ||||| |||||||||||
Sbjct 1438064 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTC 1438098
Score = 86.0 bits (94), Expect = 7e-12
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || | || ||||||||| | || | || ||||| || ||||||||||| ||
Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || ||||| || |||||||| ||||||| ||| ||||| | ||
Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132
| | ||||||||| ||| | |||| |||| | | | ||||| |||| ||
Sbjct 17514324 ATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TC 17514269
Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || | || |||||||| || || || || || ||||| || |||||
Sbjct 17514268 AACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
>seq5
Length=16150104
Score = 114 bits (126), Expect = 1e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| ||||| || |||||| ||||| ||||| || || || || || |
Sbjct 6389270 ACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCC 6389211
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || ||||| || || ||||| || | |||||||||||| | || | | ||||||
Sbjct 6389210 GTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTT 6389151
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || ||||| | | | |||||| ||||| || || | || ||
Sbjct 6389150 GTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTAT 6389091
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190
||| || |||||||| || || || ||||| ||||| ||| ||
Sbjct 6389090 GGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTTTGCG 6389048
>seq3
Length=15215380
Score = 95.1 bits (104), Expect = 1e-14
Identities = 158/223 (71%), Gaps = 14/223 (6%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||||||| | || | ||| |||||||| || |||||||| || || || || |
Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTC---TC 43084
|| || ||||| ||||||||||| |||| || || |||| ||||| || || ||
Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGT---CCGGCGCGATCCCTTC 11243584
Query 43085 CTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGA 43140
||||| | ||| | ||||| || | | | || ||||| ||| || || ||||
Sbjct 11243583 CTTGT-CTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTC---TCAACTTCGA 11243528
Query 43141 CCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||||||||| || || || || ||||| ||||||||
Sbjct 11243527 GGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
>seq4
Length=14320061
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || || || || || |||| || |||||||| || |||||
Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | |||||||||||| | || | | ||||||||| ||| || |||| |
Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||| || || || |||| || || || || || ||||| || || ||
Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324
Query 43173 AAGATTTGCATTTTT 43187
||||| ||||| |||
Sbjct 6306325 AAGATCTGCATCTTT 6306339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571807185771960
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