Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq6 114 1e-20 seq5 114 1e-20 seq3 95.1 1e-14 seq4 86.0 7e-12 >seq1 Length=19836964 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| | ||||| || | || |||||| || || |||||||| || Sbjct 7692222 TCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 7692163 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | |||| || |||||||| || ||||| || || |||||||| || | ||| Sbjct 7692162 GAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGG 7692103 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| ||| || || | | | | ||||||| ||| || || Sbjct 7692102 GATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | || || || || |||||||| || || |||||||||||||||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTTT 7691991 >seq6 Length=18523719 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||||||| | ||| ||| || || || ||||| ||||| Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || |||||||||||||| ||||| || || | ||||||||| | || Sbjct 17513928 AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGA 17513869 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||| || || ||| ||| ||||| | | | ||||| |||| || Sbjct 17513868 ATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCG 17513812 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| |||| || || |||||||||||||| Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| || || || || |||| || ||||| || || || || Sbjct 17514181 CTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAA 17514122 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||||| ||||||||| | || | | ||||||||| ||| | || | |||| Sbjct 17514121 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTCGCCTTGACGT 17514063 Query 43111 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| || || || | ||||||||||||||||| || |||| Sbjct 17514062 TATCGATTGTGTCTGAACTC---TCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCT 17514006 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| || ||||| Sbjct 17514005 TGACAAAAATCTGCAT 17513990 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||| || || ||||||||||||||||| || || | || || Sbjct 1438004 ACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCCTCG 1438063 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 |||||||| |||||||| ||||| ||||||||||| Sbjct 1438064 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTC 1438098 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || ||||||||| | || | || ||||| || ||||||||||| || Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || |||||||| ||||||| ||| ||||| | || Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| | |||| |||| | | | ||||| |||| || Sbjct 17514324 ATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TC 17514269 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || || || || ||||| || ||||| Sbjct 17514268 AACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 >seq5 Length=16150104 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| ||||| || |||||| ||||| ||||| || || || || || | Sbjct 6389270 ACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCC 6389211 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||| || || ||||| || | |||||||||||| | || | | |||||| Sbjct 6389210 GTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTT 6389151 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||||| | | | |||||| ||||| || || | || || Sbjct 6389150 GTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTAT 6389091 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||| || |||||||| || || || ||||| ||||| ||| || Sbjct 6389090 GGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTTTGCG 6389048 >seq3 Length=15215380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/223 (71%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | || | ||| |||||||| || |||||||| || || || || | Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTC---TC 43084 || || ||||| ||||||||||| |||| || || |||| ||||| || || || Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGT---CCGGCGCGATCCCTTC 11243584 Query 43085 CTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGA 43140 ||||| | ||| | ||||| || | | | || ||||| ||| || || |||| Sbjct 11243583 CTTGT-CTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTC---TCAACTTCGA 11243528 Query 43141 CCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||||||||| || || || || ||||| |||||||| Sbjct 11243527 GGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 >seq4 Length=14320061 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || |||| || || || || || ||||| || || || Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 6306325 AAGATCTGCATCTTT 6306339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807185771960