Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5 116 2e-21 seq642 95.1 8e-15 seq6 95.1 8e-15 seq4 91.5 1e-13 seq1 91.5 1e-13 >seq5 Length=16150104 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | || || ||||| ||||||||||||| ||| |||| |||| Sbjct 6389266 AGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCT 6389207 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || |||||||| | ||||||||||| || | | ||||||||| Sbjct 6389206 TCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCC 6389147 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| |||||||| || | || ||||| Sbjct 6389146 TGGATCTTC-GCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGT 6389088 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 6389087 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055 >seq642 Length=6837 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || |||| ||| | || ||| ||||| |||||||| |||| | Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || ||||| || |||| ||||| || || Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||| || ||||| | | | | || | || | ||| || Sbjct 262 ATACCCTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 320 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 321 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 369 >seq6 Length=18523719 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || |||| ||| | || ||| ||||| |||||||| |||| | Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| ||||||||||| || ||||| || |||| ||||| || || Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||| || ||||| | | | | || | || | ||| || Sbjct 1443301 ATACCCTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 1443359 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || || |||||||||||| Sbjct 1443360 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 1443408 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| | || || | || || | |||||| || ||||| Sbjct 17513952 TCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAG 17513893 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| ||||||||| || | | ||| || || |||||| ||||| | || Sbjct 17513892 ATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTGGATCTTT-GCTTTGACATT 17513834 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | ||||| || | |||||||| ||||| || | ||||||||| Sbjct 17513833 GTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCAC 17513774 Query 34378 AAAGATCTGCATC 34390 |||||| |||||| Sbjct 17513773 AAAGATTTGCATC 17513761 >seq4 Length=14320061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | |||||| || ||||| Sbjct 6306144 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 6306203 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | ||||||||||| || | | |||||||| ||||| ||| | || Sbjct 6306204 AATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 6306263 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| || ||||| || | || || || || || || || |||||||| Sbjct 6306264 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCAC 6306323 Query 34378 AAAGATCTGCATC 34390 |||||||||||| Sbjct 6306324 GAAGATCTGCATC 6306336 >seq1 Length=19836964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || | |||| |||| |||||| || |||||| Sbjct 7692185 TCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAA 7692126 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||| || | |||| | || |||||||| ||||| ||| | || Sbjct 7692125 ATCAGACGCTGCTGATCCGGCGGGATCCCT-TCCTTGTCTTGGATCTTCGCCTTCACATT 7692067 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| |||| ||| || || || | || || || || || || || |||||||| Sbjct 7692066 GTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 7692007 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 7692006 AAAGATTTGCAT 7691995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066263149920