Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 2e-21
seq642 95.1 8e-15
seq6 95.1 8e-15
seq4 91.5 1e-13
seq1 91.5 1e-13
>seq5
Length=16150104
Score = 116 bits (128), Expect = 2e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|||||||| || | || || ||||| ||||||||||||| ||| |||| ||||
Sbjct 6389266 AGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCT 6389207
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| || || |||||||| | ||||||||||| || | | |||||||||
Sbjct 6389206 TCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCC 6389147
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||||| | || | | || | |||| |||||||| || | || |||||
Sbjct 6389146 TGGATCTTC-GCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGT 6389088
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || || || |||||||| |||||||||||
Sbjct 6389087 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055
>seq642
Length=6837
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || || || |||| ||| | || ||| ||||| |||||||| |||| |
Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| |||| |||| ||||||||||| || ||||| || |||| ||||| || ||
Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||| || ||||| | | | | || | || | ||| ||
Sbjct 262 ATACCCTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 320
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || ||||||||||| || || ||||||||||||
Sbjct 321 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 369
>seq6
Length=18523719
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || || || |||| ||| | || ||| ||||| |||||||| |||| |
Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| |||| |||| ||||||||||| || ||||| || |||| ||||| || ||
Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||| || ||||| | | | | || | || | ||| ||
Sbjct 1443301 ATACCCTCCTTGTCCTGGATC-TTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 1443359
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || ||||||||||| || || ||||||||||||
Sbjct 1443360 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCATC 1443408
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|||||||| ||||||||||| | || || | || || | |||||| || |||||
Sbjct 17513952 TCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAG 17513893
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317
|| |||| ||||||||| || | | ||| || || |||||| ||||| | ||
Sbjct 17513892 ATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTGGATCTTT-GCTTTGACATT 17513834
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | || | ||||| || | |||||||| ||||| || | |||||||||
Sbjct 17513833 GTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCAC 17513774
Query 34378 AAAGATCTGCATC 34390
|||||| ||||||
Sbjct 17513773 AAAGATTTGCATC 17513761
>seq4
Length=14320061
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || || |||| || | |||||| || |||||
Sbjct 6306144 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 6306203
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||| | ||||||||||| || | | |||||||| ||||| ||| | ||
Sbjct 6306204 AATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 6306263
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | |||| || ||||| || | || || || || || || || ||||||||
Sbjct 6306264 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCAC 6306323
Query 34378 AAAGATCTGCATC 34390
||||||||||||
Sbjct 6306324 GAAGATCTGCATC 6306336
>seq1
Length=19836964
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| |||||||| || | || | |||| |||| |||||| || ||||||
Sbjct 7692185 TCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAA 7692126
Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| || |||||||| || | |||| | || |||||||| ||||| ||| | ||
Sbjct 7692125 ATCAGACGCTGCTGATCCGGCGGGATCCCT-TCCTTGTCTTGGATCTTCGCCTTCACATT 7692067
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | |||| |||| ||| || || || | || || || || || || || ||||||||
Sbjct 7692066 GTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 7692007
Query 34378 AAAGATCTGCAT 34389
|||||| |||||
Sbjct 7692006 AAAGATTTGCAT 7691995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323066263149920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |