Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 120 2e-22 seq5 107 2e-18 seq4 102 6e-17 seq642 98.7 8e-16 seq762 91.5 1e-13 >seq6 Length=18523719 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| || ||||||||| || ||| | || || Sbjct 17514654 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACCATCCTCA 17514595 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| || | || ||||||||| ||||| | || ||||||||| | Sbjct 17514594 AGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 17514535 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||| ||||||| |||||| |||||| Sbjct 17514534 ATCTTAGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 17514475 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||| |||||||| Sbjct 17514474 CCTGTCAAAGTCTTCACAAATATTTGCAT 17514446 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | |||||||| || ||| |||||||| |||||||| ||| | Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| |||| || ||||||||||| || | || || || || ||||| Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||||| | | || |||| | || | | | | |||| | || || Sbjct 1443301 ATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 1443359 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||| || || |||||||| || ||||| ||||| Sbjct 1443360 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||| ||||| ||||||||||| ||| |||| | || || Sbjct 17513970 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTCT 17513911 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | || ||| ||||| ||||| | ||||| || || Sbjct 17513910 AGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTGG 17513851 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| || || | | | |||| | ||| ||||| | || || |||||| Sbjct 17513850 ATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTG 17513791 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | ||| ||||||||||||||||| Sbjct 17513790 CCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 ||||||||| |||||||| ||| || ||| || |||| |||| || ||||||||| Sbjct 1438314 CTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCTCCAACTGCTTTCCGGCG 1438371 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || || | | ||| || || ||||| | ||| ||||| ||| | | || |||| | | Sbjct 1438372 AAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGA-TCTTGGCTTTAAC 1438430 Query 45263 GCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321 | | | | | |||| | |||||||| | ||| || |||||||| || |||||||| Sbjct 1438431 GTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 1438490 Query 45322 CACAAAGATTTGCAT 45336 || ||||| ||||| Sbjct 1438491 GACGAAGATCTGCAT 1438505 >seq5 Length=16150104 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||||| |||||||||||||||||||||| || || |||| ||| Sbjct 6389263 ACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCC 6389204 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| || || ||||| ||||| || || | |||||||||||| Sbjct 6389203 AGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGG 6389144 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | |||| || ||||| | ||| || ||||| Sbjct 6389143 ATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTC 6389084 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||| ||||| |||||||| Sbjct 6389083 CCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052 >seq4 Length=14320061 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| |||| || || || ||||||||||| Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||| ||||| | || ||||||||| || || ||| || Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| ||| ||||| | |||||| ||||| || || || || ||||| Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324 Query 45326 AAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 6306325 AAGATCTGCATCTT 6306338 >seq642 Length=6837 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | |||||||| || ||| |||||||| |||||||| ||| | Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| |||| || ||||||||||| || | || || || || ||||| Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||||| | | || |||| | || | | | | |||| | || || Sbjct 262 ATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 320 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || ||||| || || |||||||| || ||||| ||||| Sbjct 321 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq762 Length=4953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 ||||||||| |||||||| ||| || ||| || |||| |||| || ||||||||| Sbjct 178 CTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCTCCAACTGCTTTCCGGCG 235 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || || | | ||| || || ||||| | ||| ||||| ||| | | || |||| | | Sbjct 236 AAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGA-TCTTGGCTTTAAC 294 Query 45263 GCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321 | | | | | |||| | |||||||| | ||| || |||||||| || |||||||| Sbjct 295 GTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 354 Query 45322 CACAAAGATTTGCAT 45336 || ||||| ||||| Sbjct 355 GACGAAGATCTGCAT 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395068184575597