Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 120 2e-22
seq5 107 2e-18
seq4 102 6e-17
seq642 98.7 8e-16
seq762 91.5 1e-13
>seq6
Length=18523719
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| || ||||||||| || ||| | || ||
Sbjct 17514654 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACCATCCTCA 17514595
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || ||||| || | || ||||||||| ||||| | || ||||||||| |
Sbjct 17514594 AGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGA 17514535
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| | ||| ||||||| |||||| ||||||
Sbjct 17514534 ATCTTAGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 17514475
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||||||| ||||||||
Sbjct 17514474 CCTGTCAAAGTCTTCACAAATATTTGCAT 17514446
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | | ||| | |||||||| || ||| |||||||| |||||||| ||| |
Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || |||| |||| || ||||||||||| || | || || || || |||||
Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288
| ||||||||||||| | | || |||| | || | | | | |||| | || ||
Sbjct 1443301 ATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 1443359
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | ||| || ||||| || || |||||||| || ||||| |||||
Sbjct 1443360 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||| ||||| ||||||||||| ||| |||| | || ||
Sbjct 17513970 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTCT 17513911
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | || ||| ||||| ||||| | ||||| || ||
Sbjct 17513910 AGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTGG 17513851
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| || || | | | |||| | ||| ||||| | || || ||||||
Sbjct 17513850 ATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTG 17513791
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || | ||| |||||||||||||||||
Sbjct 17513790 CCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202
||||||||| |||||||| ||| || ||| || |||| |||| || |||||||||
Sbjct 1438314 CTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCTCCAACTGCTTTCCGGCG 1438371
Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262
|| || | | ||| || || ||||| | ||| ||||| ||| | | || |||| | |
Sbjct 1438372 AAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGA-TCTTGGCTTTAAC 1438430
Query 45263 GCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321
| | | | | |||| | |||||||| | ||| || |||||||| || ||||||||
Sbjct 1438431 GTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 1438490
Query 45322 CACAAAGATTTGCAT 45336
|| ||||| |||||
Sbjct 1438491 GACGAAGATCTGCAT 1438505
>seq5
Length=16150104
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||||| |||||||||||||||||||||| || || |||| |||
Sbjct 6389263 ACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCC 6389204
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| |||||||| || || ||||| ||||| || || | ||||||||||||
Sbjct 6389203 AGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGG 6389144
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || || || | | | |||| || ||||| | ||| || |||||
Sbjct 6389143 ATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTC 6389084
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
||||| || || ||||| ||||| ||||||||
Sbjct 6389083 CCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052
>seq4
Length=14320061
Score = 102 bits (112), Expect = 6e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
|||||||| |||||||||||| || ||| |||| || || || |||||||||||
Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
||||| ||||| ||||| ||||| | || ||||||||| || || ||| ||
Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| ||| ||||| | |||||| ||||| || || || || |||||
Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324
Query 45326 AAGATTTGCATGTT 45339
||||| ||||| ||
Sbjct 6306325 AAGATCTGCATCTT 6306338
>seq642
Length=6837
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | | ||| | |||||||| || ||| |||||||| |||||||| ||| |
Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || |||| |||| || ||||||||||| || | || || || || |||||
Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288
| ||||||||||||| | | || |||| | || | | | | |||| | || ||
Sbjct 262 ATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAAC 320
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | ||| || ||||| || || |||||||| || ||||| |||||
Sbjct 321 CTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq762
Length=4953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202
||||||||| |||||||| ||| || ||| || |||| |||| || |||||||||
Sbjct 178 CTCCTTCTGGATGTTGTAATCGGCCAAAGTT--CGGCCGTCCTCCAACTGCTTTCCGGCG 235
Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262
|| || | | ||| || || ||||| | ||| ||||| ||| | | || |||| | |
Sbjct 236 AAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGA-TCTTGGCTTTAAC 294
Query 45263 GCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321
| | | | | |||| | |||||||| | ||| || |||||||| || ||||||||
Sbjct 295 GTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 354
Query 45322 CACAAAGATTTGCAT 45336
|| ||||| |||||
Sbjct 355 GACGAAGATCTGCAT 369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395068184575597
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |