Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 286 3e-72 seq5 116 3e-21 seq1 114 1e-20 seq642 111 1e-19 seq6 111 1e-19 seq4 93.3 4e-14 seq3 84.2 2e-11 >seq2 Length=13294645 Score = 286 bits (316), Expect = 3e-72 Identities = 604/885 (68%), Gaps = 17/885 (2%) Strand=Plus/Plus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| ||||| ||||| |||| ||| | || ||| | |||||||| ||||| || Sbjct 9186146 AGATTCTGT-ATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGA 9186204 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| || ||||| | ||||||||| || || || | || |||| ||||| Sbjct 9186205 AGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTTCGCAAGACGGTCGCGACTGGGAGAA 9186264 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 || || || || || | || || |||||||| | || || |||||||| || || Sbjct 9186265 TCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAGA 9186324 Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775 || || ||| |||||| | | ||||| || |||||||| ||||||| Sbjct 9186325 CGGAATCGTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGGC 9186384 Query 57776 GAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGC 57834 | | |||||| ||||| || || | || ||||| ||| | || || || ||||| | Sbjct 9186385 GCG-TGCTTTCTACGGTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGTC 9186443 Query 57835 TACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCG 57894 | ||| |||| || ||| | ||||||||| | |||| | || ||| |||||||| Sbjct 9186444 TCCTCCTCGACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCG 9186503 Query 57895 AAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC 57953 |||| || || ||| |||||||||| || ||||| | || || ||||| | | | Sbjct 9186504 AAACCATCCCTTGCG-TCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGATCT 9186562 Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013 | || || |||||||| | |||| |||||| ||||||||||| ||||| || Sbjct 9186563 CAG---ACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCC 9186619 Query 58014 GGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || ||||| ||| | || || ||| |||| || || || || |||||||| | || || Sbjct 9186620 GGTAGCTTCTGC-TCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTT 9186678 Query 58073 TAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 |||||||||||| || || ||||| || | ||| ||||| |||||||| || || Sbjct 9186679 CTCCAACGAGTTGATCTCACGAGACGAAGGCTTACATTGCGATTTCGCGTGCCTGATCTA 9186738 Query 58133 CTCTCACATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGG 58191 | | | | |||| | || | || ||| ||| | | || || ||| || | Sbjct 9186739 CACGCTC-TTGTGGACGAAGCTCTCCGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCG 9186797 Query 58192 TCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACA 58251 ||| |||||| | |||||||| ||| || || ||| || || | || ||||||| Sbjct 9186798 TCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAACA 9186857 Query 58252 ATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTT--GCTCGAACTGAT 58309 ||| ||||| |||||||||||||||| || || || ||||| | || | | | Sbjct 9186858 GTGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGT 9186917 Query 58310 TGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGA 58369 | | || ||| | ||||||||||||| ||| | | |||||||| | Sbjct 9186918 ACGGTAAGGT--GTACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCA 9186975 Query 58370 GGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 ||| || |||||||| ||||| || | |||| |||| || ||||| Sbjct 9186976 GGGGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCAAAA 9187020 >seq5 Length=16150104 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || ||||| || || || || || || || || ||| | || || ||| Sbjct 6389050 CAAACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAAT 6389109 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | |||||| || || ||||||||| || | || || | Sbjct 6389110 CCTCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGG 6389169 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| |||| ||||| || |||||| |||||||| || | ||| | Sbjct 6389170 ACCAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACT 6389229 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | |||||||| || || ||||| || |||||||| || Sbjct 6389230 ACAACATTCAGAAGGAGTCGACGCTGCATCTGGTGCT 6389266 >seq1 Length=19836964 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| || || || || || || || || ||||| ||| | || ||||| | Sbjct 7691991 AAAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTC 7692050 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||||||| |||| | || || || || ||||||||||| | ||||| || Sbjct 7692051 GTCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGA 7692110 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || ||||| || || ||| |||||||| | ||| | ||||| Sbjct 7692111 TCAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTA 7692170 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || ||||| ||||| |||| || | ||||| || || Sbjct 7692171 CAACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGG 7692221 >seq642 Length=6837 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || || |||||| |||| |||||| || Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | || | ||| | ||||||||| || | || || || || Sbjct 308 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 250 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || ||||| || || |||||||||||| ||| || |||||| || Sbjct 249 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 190 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || || || |||| || ||||| | || |||| Sbjct 189 CATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGTA 140 >seq6 Length=18523719 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || || |||||| |||| |||||| || Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | || | ||| | ||||||||| || | || || || || Sbjct 1443347 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 1443289 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || ||||| || || |||||||||||| ||| || |||||| || Sbjct 1443288 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 1443229 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || || || |||| || ||||| | || |||| Sbjct 1443228 CATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGTA 1443179 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||||||||| || || ||| | || ||||| || Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||||||| | || || ||||| Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 17514565 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| |||||| | || || | |||| || ||| || || Sbjct 17514566 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAAT 17514625 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || ||||||||||| |||| ||| Sbjct 17514626 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTT 17514658 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || |||||||| ||||| | || ||||| || Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||||||| | || || |||||| Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| | |||||| || | ||||| ||| Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || || || || ||||| || || Sbjct 17514170 ATCCAAAAGGAGTCTACGCTCCATCTTGTGCT 17514201 >seq4 Length=14320061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| |||| ||||| || ||||| || || || ||||| || || || ||| |||| || Sbjct 6306344 GAAGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTCGAGGTC 6306285 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || | ||||||| |||| | ||||| | || |||||||||||| | || Sbjct 6306284 GAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCT 6306225 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || ||||||||||| | || ||||| || || ||| | || ||| || | | Sbjct 6306224 CCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCC 6306165 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || |||||||| ||||| || || || Sbjct 6306164 GACTACAACATCCAGAAGGAATCGACCCTTCACCTCGTCCT 6306124 >seq3 Length=15215380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || || |||||||| || ||| |||| ||||| || Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| ||| || | || || ||| ||| | | |||||||||| | |||| ||||| Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCAAG-ACAAGGAAGGGATCGCGCCGGACCA 11243603 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | || |||||||| |||||| | || || | || | ||||| || Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| ||||| ||||| || ||||| || || Sbjct 11243664 CATCCAAAAGGAATCAACACTTCACCTTGT 11243693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758281479440