Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2 286 3e-72
seq5 116 3e-21
seq1 114 1e-20
seq642 111 1e-19
seq6 111 1e-19
seq4 93.3 4e-14
seq3 84.2 2e-11
>seq2
Length=13294645
Score = 286 bits (316), Expect = 3e-72
Identities = 604/885 (68%), Gaps = 17/885 (2%)
Strand=Plus/Plus
Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595
||||| ||| ||||| ||||| |||| ||| | || ||| | |||||||| ||||| ||
Sbjct 9186146 AGATTCTGT-ATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGA 9186204
Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655
|||||| || ||||| | ||||||||| || || || | || |||| |||||
Sbjct 9186205 AGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTTCGCAAGACGGTCGCGACTGGGAGAA 9186264
Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715
|| || || || || | || || |||||||| | || || |||||||| || ||
Sbjct 9186265 TCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAGA 9186324
Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775
|| || ||| |||||| | | ||||| || |||||||| |||||||
Sbjct 9186325 CGGAATCGTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGGC 9186384
Query 57776 GAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGC 57834
| | |||||| ||||| || || | || ||||| ||| | || || || ||||| |
Sbjct 9186385 GCG-TGCTTTCTACGGTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGTC 9186443
Query 57835 TACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCG 57894
| ||| |||| || ||| | ||||||||| | |||| | || ||| ||||||||
Sbjct 9186444 TCCTCCTCGACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCG 9186503
Query 57895 AAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC 57953
|||| || || ||| |||||||||| || ||||| | || || ||||| | | |
Sbjct 9186504 AAACCATCCCTTGCG-TCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGATCT 9186562
Query 57954 ACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCG 58013
| || || |||||||| | |||| |||||| ||||||||||| ||||| ||
Sbjct 9186563 CAG---ACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCC 9186619
Query 58014 GGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
|| ||||| ||| | || || ||| |||| || || || || |||||||| | || ||
Sbjct 9186620 GGTAGCTTCTGC-TCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTT 9186678
Query 58073 TAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132
|||||||||||| || || ||||| || | ||| ||||| |||||||| || ||
Sbjct 9186679 CTCCAACGAGTTGATCTCACGAGACGAAGGCTTACATTGCGATTTCGCGTGCCTGATCTA 9186738
Query 58133 CTCTCACATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGG 58191
| | | | |||| | || | || ||| ||| | | || || ||| || |
Sbjct 9186739 CACGCTC-TTGTGGACGAAGCTCTCCGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCG 9186797
Query 58192 TCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACA 58251
||| |||||| | |||||||| ||| || || ||| || || | || |||||||
Sbjct 9186798 TCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAACA 9186857
Query 58252 ATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTT--GCTCGAACTGAT 58309
||| ||||| |||||||||||||||| || || || ||||| | || | | |
Sbjct 9186858 GTGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGT 9186917
Query 58310 TGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGA 58369
| | || ||| | ||||||||||||| ||| | | |||||||| |
Sbjct 9186918 ACGGTAAGGT--GTACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCA 9186975
Query 58370 GGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414
||| || |||||||| ||||| || | |||| |||| || |||||
Sbjct 9186976 GGGGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCAAAA 9187020
>seq5
Length=16150104
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || ||||| || || || || || || || || ||| | || || |||
Sbjct 6389050 CAAACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAAT 6389109
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | |||||| || || ||||||||| || | || || |
Sbjct 6389110 CCTCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGG 6389169
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| |||| ||||| || |||||| |||||||| || | ||| |
Sbjct 6389170 ACCAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACT 6389229
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| |||||||| || || ||||| || |||||||| ||
Sbjct 6389230 ACAACATTCAGAAGGAGTCGACGCTGCATCTGGTGCT 6389266
>seq1
Length=19836964
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| |||||||| || || || || || || || || ||||| ||| | || ||||| |
Sbjct 7691991 AAAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTC 7692050
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|||||||| |||| | || || || || ||||||||||| | ||||| ||
Sbjct 7692051 GTCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGA 7692110
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
||||||||||| || ||||| || || ||| |||||||| | ||| | |||||
Sbjct 7692111 TCAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTA 7692170
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || || || ||||| ||||| |||| || | ||||| || ||
Sbjct 7692171 CAACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGG 7692221
>seq642
Length=6837
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || || || || |||||| |||| |||||| ||
Sbjct 368 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 309
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| |||| | || | ||| | ||||||||| || | || || || ||
Sbjct 308 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 250
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || ||||| || || |||||||||||| ||| || |||||| ||
Sbjct 249 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 190
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || ||||| || || || |||| || ||||| | || ||||
Sbjct 189 CATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGTA 140
>seq6
Length=18523719
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || || || || |||||| |||| |||||| ||
Sbjct 1443407 ATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCTCT 1443348
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| |||| | || | ||| | ||||||||| || | || || || ||
Sbjct 1443347 GACACCATCGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGTATTCCTCCGGATCA 1443289
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || ||||| || || |||||||||||| ||| || |||||| ||
Sbjct 1443288 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACAA 1443229
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || ||||| || || || |||| || ||||| | || ||||
Sbjct 1443228 CATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGTA 1443179
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || |||||| |||||||||| || || ||| | || ||||| ||
Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || |||||||||||| | || || |||||
Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAA 17514565
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || |||||||| |||||| | || || | |||| || ||| || ||
Sbjct 17514566 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAAT 17514625
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| || || || ||||||||||| |||| |||
Sbjct 17514626 ATCCAGAAGGAGTCGACTCTTCACTTGGTTCTT 17514658
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || ||||| || || |||||||| ||||| | || ||||| ||
Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || |||||||||||| | || || ||||||
Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || || |||||| | |||||| || | ||||| |||
Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| || || || || ||||| || ||
Sbjct 17514170 ATCCAAAAGGAGTCTACGCTCCATCTTGTGCT 17514201
>seq4
Length=14320061
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243
||| |||| ||||| || ||||| || || || ||||| || || || ||| |||| ||
Sbjct 6306344 GAAGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTCGAGGTC 6306285
Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303
|| | ||||||| |||| | ||||| | || |||||||||||| | ||
Sbjct 6306284 GAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCT 6306225
Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363
|| ||||||||||| | || ||||| || || ||| | || ||| || | |
Sbjct 6306224 CCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCC 6306165
Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || ||||| || || |||||||| ||||| || || ||
Sbjct 6306164 GACTACAACATCCAGAAGGAATCGACCCTTCACCTCGTCCT 6306124
>seq3
Length=15215380
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || || || || |||||||| || ||| |||| ||||| ||
Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| ||| || | || || ||| ||| | | |||||||||| | |||| |||||
Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCAAG-ACAAGGAAGGGATCGCGCCGGACCA 11243603
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| | | || |||||||| |||||| | || || | || | ||||| ||
Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||| ||||| ||||| || ||||| || ||
Sbjct 11243664 CATCCAAAAGGAATCAACACTTCACCTTGT 11243693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445758281479440
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