Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq2 91.5 1e-13 >seq4 Length=14320061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| || || || | |||||||||||||| |||||||| | | Sbjct 320839 TTGAGGCCTTGGAGTTCCTGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 320780 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 ||||| ||| ||||| | || ||| | | |||||| ||| || || | || Sbjct 320779 CGACATCAAATGGTATGTCTTGATCACAGAAGCAATATCATTCTTGTGGATGCCAACAGC 320720 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATA 38579 |||||||| ||||| ||||| || ||||| | | ||| | ||| | || || Sbjct 320719 AACCCTCATCAGCATGTGTTGAGGCCTTTCGACAACTTTCCCGTGGACTTTCAAGAGGTA 320660 Query 38580 CGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 ||| | || | |||||| | |||||| ||| |||| | |||| | ||||| Sbjct 320659 AGATCTCTCAAGTGTTTTAAATCCAAAGTAATCATATTCAAAATCACGGTCGTA 320606 >seq2 Length=13294645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 375/586 (64%), Gaps = 4/586 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 ||||| ||||| |||||||| |||||||||| || | || || || || |||||| Sbjct 9186729 CACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAAT 9186670 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAAGAA 11748 |||||||| | ||||| ||||| | ||| || || | |||| || ||| || ||||| Sbjct 9186669 CCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAA 9186611 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATAT 11808 || || || ||| || || || || | ||| || || | || | | || Sbjct 9186610 GATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGATCCATCGAT 9186551 Query 11809 CCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 ||| || | ||||| | |||||||| ||||| || ||||| || ||| || Sbjct 9186550 CCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAA 9186491 Query 11869 TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 | ||| | | ||| | || || | | || || || | | | ||| ||||| || Sbjct 9186490 GAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTC 9186431 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 || || || || || || || || || || || |||||| || ||||| || || Sbjct 9186430 GGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTG 9186371 Query 11989 TACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 ||||| |||| ||||| || | |||||| || || || || | || | Sbjct 9186370 CACATCGGACAT-AAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGA 9186312 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCAT 12107 | || || |||| ||||| || |||| | |||| | | ||| || ||||| || Sbjct 9186311 AGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTCGC 9186252 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 |||| || | ||| |||||||| | ||||| ||| ||| | | | || | Sbjct 9186251 GACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTTGT 9186192 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||| | |||||| | | || | || ||||| ||| ||| || Sbjct 9186191 ACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCT 9186146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468516266992080