Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2 159 5e-34
seq7 95.1 2e-14
>seq2
Length=13294645
Score = 159 bits (176), Expect = 5e-34
Identities = 396/593 (67%), Gaps = 6/593 (1%)
Strand=Plus/Minus
Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211
|||| || ||||||||||| |||| || ||||||| || || |||||||| ||
Sbjct 9186735 ATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAG 9186676
Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270
|| | ||||||||| || || |||||||| ||||| || || || ||| | | | || ||
Sbjct 9186675 GTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 9186617
Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330
||||| || ||||| || || || || | | |||||| || || | |
Sbjct 9186616 GAAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGATCC 9186557
Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390
|| |||||||| ||||| | ||| ||||| || ||||| || || || || ||
Sbjct 9186556 ATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497
Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450
||||||| || | | || || | || || | || || || | | ||||| ||
Sbjct 9186496 GCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTA 9186437
Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510
||| || || || ||||| ||||| || || || || ||||||||| | ||||| |
Sbjct 9186436 CATCTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGA 9186377
Query 36511 AATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569
| || || || | ||| |||||| || | ||| || || |||||||| ||
Sbjct 9186376 GACTTGCACATC-GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGG 9186318
Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TTTGGTGTTAGTTTATTC 36628
| || || || || | ||| ||||| || || | | |||| | || |||| || | |
Sbjct 9186317 CGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGT-TTAGATTCTCC 9186259
Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688
|| || |||| || | ||| |||||||| | ||||| || ||||| || |||
Sbjct 9186258 CAGTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCC 9186199
Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
|| || ||||| | |||||| | | ||||| || || || ||| |||||
Sbjct 9186198 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCT 9186146
>seq7
Length=17055980
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
|||||| ||||| | || | ||| || | ||| | || | | |||||||| ||||||
Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| |||| ||||| || || || || |||||| |||| || || || || |||
Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| |||||||||||| || ||| || | || || ||| | ||| ||||| ||
Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667
Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436
|| || || ||||||||| ||||| | ||||| |||||
Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
||||||| ||| || | || ||||| || || || |||||| | ||| | || ||
Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463
Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574
|| || | || || || || |||||| | ||| ||||| || || | || | ||| |
Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404
Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 66633
|||||||||||| |||||||| | ||| | || | ||| || | ||| ||||| || |
Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCA-CTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAA 15540345
Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682
|||||| || ||||| || | ||| ||| || || || || || ||
Sbjct 15540344 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGATCATAGATGAT 15540296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658160813027880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |