Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 208 1e-48 seq4 95.1 2e-14 seq7 93.3 6e-14 >seq2 Length=13294645 Score = 208 bits (230), Expect = 1e-48 Identities = 414/605 (68%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || ||||||||||| || | || ||||||| || | |||||||| || Sbjct 9186735 ATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAG 9186676 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 || | ||||||||| || || |||||||| ||||| || || || ||| || || || Sbjct 9186675 GTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 9186617 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT-GGCGCTGT 50131 |||||||| ||||| || ||| || || || | |||||| || || | | | | Sbjct 9186616 GAAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGAT-C 9186558 Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 ||| |||||||| ||||| | ||| ||||| || ||||| || ||||| || | Sbjct 9186557 CATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCG 9186498 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||||| || | | || || | || || | ||||| |||| | ||||| | Sbjct 9186497 CGCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGT 9186438 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| || || || ||||| ||||| || ||||| || ||||||||| | ||||| | Sbjct 9186437 ACATCTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCG 9186378 Query 50312 TAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | ||||| || | ||| |||||| ||| | ||| || || |||||||| | Sbjct 9186377 AGACTTGCACATC-GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAG 9186319 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || || | ||| ||||| || || ||| |||| | |||| || | | Sbjct 9186318 GCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCC 9186259 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || |||| || | ||| |||||||| | ||||| || ||||| || ||| Sbjct 9186258 CAGTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCC 9186199 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | |||||| | | |||||||| ||||| ||| ||||| | ||| Sbjct 9186198 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTGGG 9186139 Query 50551 TTTGG 50555 |||| Sbjct 9186138 GTTGG 9186134 >seq4 Length=14320061 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | || | || | || |||||| | |||||| Sbjct 321166 TCCTCCTTGGTCAACATAACGAGCCGTATCGTTGAATACGCGCAGCATTGGGACAATACC 321107 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || || ||||| || || || ||||||||| | ||||| |||||| || ||| Sbjct 321106 ATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGA 321047 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| || | || || ||||| || |||||||| Sbjct 321046 AACACCAATACCCCCAGCGGATTTGCTTATAACAGCACACTCTTTTAGTGTTTCATAGAT 320987 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| |||| | ||||| ||||| Sbjct 320986 ACCCTCAATGCTATCATCTTTCATACAGATCAGAAAGCAGCT 320945 >seq7 Length=17055980 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||||| ||| || | || ||||| || || || |||||| | ||||| || || Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | || || || || |||||| | ||| ||||| || || | || | ||| | Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||||| |||||||| | ||| | || | ||| || | ||| ||||| || | Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCA-CTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAA 15540345 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| || | ||| ||| || || || || || || Sbjct 15540344 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGATCATAGATGAT 15540296 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| |||| ||||| || || || || |||||| | || || || || || ||| Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | |||||||||||| || ||| || | || || ||| | ||| ||||| || Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || || ||||||||||| ||||| | ||||| ||||| Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718255718529480