Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 196 6e-45 seq7 98.7 1e-15 >seq2 Length=13294645 Score = 196 bits (216), Expect = 6e-45 Identities = 411/605 (68%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||| || ||||||||||| || | || || |||| || || |||||||| || Sbjct 9186735 ATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAG 9186676 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 || | ||||||||| || || |||||||| ||||| || || || ||| | | | || || Sbjct 9186675 GTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 9186617 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||||| ||||| || || || || | | |||||| || || | | Sbjct 9186616 GAAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGATCC 9186557 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| | ||| ||||| || ||||| || ||||| || || Sbjct 9186556 ATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||||| || | | || || | || || | || || |||| | ||||| || Sbjct 9186496 GCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTA 9186437 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| ||||| || ||||| || ||||||||| | ||||| | Sbjct 9186436 CATCTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGA 9186377 Query 42418 AACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 || || || || | ||| |||||| ||| | ||| || || |||||||| || Sbjct 9186376 GACTTGCACATC-GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGG 9186318 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG-TTAATTTATTC 42535 | || || || || | ||| ||||| || || | | |||| ||| | ||| || | | Sbjct 9186317 CGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCG-CCGTCGTTTAGATTCTCC 9186259 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || || |||| || | ||| |||||||| ||||||| || |||||||| ||| Sbjct 9186258 CAGTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCC 9186199 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 || || ||||| | |||||| | | ||||| || ||||| ||| ||||| | ||| Sbjct 9186198 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTGGG 9186139 Query 42656 TTTGG 42660 |||| Sbjct 9186138 GTTGG 9186134 >seq7 Length=17055980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| ||||| ||||| || || || || |||||| | || || || ||| || ||| Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | |||||||||||| || ||| || | || || ||| | ||| ||||| || Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || || || ||||||||| ||||| | ||||| ||||| Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671126976877320