Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 140 5e-28 >seq2 Length=13294645 Score = 140 bits (154), Expect = 5e-28 Identities = 375/559 (67%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| | || || || ||||||| |||||| |||||||| Sbjct 9186179 ATCTGGGAGATGTACAAGAAGGCCGAAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTT 9186238 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||| ||||||| || | | || || ||| | || || Sbjct 9186239 TCGCAAGACGGTCGCGACTGGGAGAATC---TAAACGACGGCGAACGACACTTCATCAAA 9186295 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||| || |||||||| || ||||| | ||| Sbjct 9186296 CACGTACTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTCTGGAGAATCTCGCTTCCCGA 9186355 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 || | || || || | | || | |||| | |||||||| ||||| ||||| ||| | Sbjct 9186356 TTTATGTCC-GATGTG-CAAGTCTCGGAGGCG-CGTGCTTTCTACGGTTTCCAGATCGCG 9186412 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 ||||||||| | ||||| || |||||| | || | |||| ||||| || | Sbjct 9186413 ATTGAGAACATACACTCCGAGATGTACAGTCTCCTCCTCGACACTTACATCAAGGA-CAA 9186471 Query 125316 CAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| | | | || ||||| ||| ||||| || | || | | || || || Sbjct 9186472 CAAAGAGAGAGACCATCTCTTCCGCGCGATCGAAACCATCCCTTGCGTCGCCAAGAAAGC 9186531 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 || |||| ||| ||||||||||| || ||| ||||| ||| | || || Sbjct 9186532 CCAGTGGGCGATGAAGTGGATCGATGGATCTCAGACTTTT---GCCGAGAGAATCGTCGC 9186588 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCA 125493 |||||| || || || |||||||| || ||||| || ||| | || || ||||| | Sbjct 9186589 TTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CGATTTTCTGGCTGA 9186647 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 | ||||| || |||||||||||| | || | |||||||| || || |||||||| | Sbjct 9186648 AAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAGTTGATCTCACGAGACGAAG 9186707 Query 125554 GCCTACACTGTGACTTTGC 125572 || |||| || || || || Sbjct 9186708 GCTTACATTGCGATTTCGC 9186726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741045703459320