Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 143 6e-29 seq3 131 4e-25 seq1 113 1e-19 >seq6 Length=18523719 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | ||| | || || |||||||| || || |||||| Sbjct 17513991 ATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 17513932 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| |||||||| || || || || || || |||||||| || || ||| Sbjct 17513931 GCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| |||||||| || ||||||||||| ||||| || | ||| || || | || Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTC-AGAGCTCTC 17513813 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || | ||||| ||||| || ||||| Sbjct 17513812 GACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| || || | || || | ||| || || || ||||| ||| Sbjct 17514414 GTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCCAGCTGTTTCCCA 17514355 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || |||||||| || || || || ||||| || |||||||||||||| || Sbjct 17514354 GCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCCTTG 17514295 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| || ||||| || || || ||||| || Sbjct 17514294 ACGTTATCGATTGTGTC-TGAGCTCTCAACCTCAAGAGTAATGGTTTTCCCGGTAAGGGT 17514236 Query 104542 TTTTACAAATATCTGCAT 104559 ||| ||||| |||||||| Sbjct 17514235 TTTCACAAAAATCTGCAT 17514218 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| | | ||| | ||| || || || ||||| ||| Sbjct 17514642 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCA 17514583 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || ||||||||||| || ||||| || ||||| || ||||||||||| || || Sbjct 17514582 GCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTC 17514523 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| | ||||||||||| || || | || Sbjct 17514522 ACGTTGTCGATTGTGTC-TGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGT 17514464 Query 104542 TTTTACAAATATCTGCAT 104559 || |||||||| ||||| Sbjct 17514463 CTTCACAAATATTTGCAT 17514446 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || || || || || || || | || || | |||||| Sbjct 17514201 AGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCT 17514142 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || ||||| || ||||| || || ||||| || || || || || ||||| || ||| Sbjct 17514141 TCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC 17514082 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | || || | || ||||| | || || || Sbjct 17514081 TGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTT 17514022 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| |||||||| Sbjct 17514021 TTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 >seq3 Length=15215380 Score = 131 bits (144), Expect = 4e-25 Identities = 151/201 (75%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT-CTACCGTCTTCTAGTTGTTTTCC 104421 ||||| ||||||||||| ||||| || | || ||| | ||| ||||| || || || || Sbjct 11243910 GTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACCATCTTCGAGCTGATTCCC 11243851 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||| ||||||||||| || || || | || ||||||||||| |||||||| || || Sbjct 11243850 GGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTTATCTTGAATCTTGGCCTT 11243791 Query 104482 TACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || | |||| ||| ||| ||||| || || || |||||||| || | Sbjct 11243790 CACATTATCAATCATATCAGAGCT---TTCAACCTCAAGAGTGATGGTCTTACCCGTCAA 11243734 Query 104539 TGTTTTTACAAATATCTGCAT 104559 || || ||||| |||||||| Sbjct 11243733 AGTCTTGACAAAGATCTGCAT 11243713 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || |||||||| || || ||||| || | ||| ||||| ||| ||||| Sbjct 3297958 CCTTCCTTGTCTTGAATCTTGGCCTTGACATTATCGATGGTGTCGCTGCTTTCGACCTCG 3298017 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 3298018 AGAGTGATGGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATTTT 3298064 >seq1 Length=19836964 Score = 113 bits (124), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| | ||| |||| || |||||||||||||| ||| Sbjct 10373769 GTCGACTCTTTCTGGATGTTGTAGTCCGCTAGCGTTCGGCCATCTTCTAGTTGTTTACCA 10373828 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| || | ||||||||||||||| |||||||| ||||| ||||| Sbjct 10373829 GCAAATATCAACCTCTGTTGATCAGGTGGTATTCCCTCTTTGTCCTG 10373875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151376905910556