Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 6e-29
seq3 131 4e-25
seq1 113 1e-19
>seq6
Length=18523719
Score = 143 bits (158), Expect = 6e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | ||| || | ||| | || || |||||||| || || ||||||
Sbjct 17513991 ATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 17513932
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || | ||| |||||||| || || || || || || |||||||| || || |||
Sbjct 17513931 GCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| ||||| |||||||| || ||||||||||| ||||| || | ||| || || | ||
Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTC-AGAGCTCTC 17513813
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| || || | ||||| ||||| || |||||
Sbjct 17513812 GACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 125 bits (138), Expect = 2e-23
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| ||||| || || | || || | ||| || || || ||||| |||
Sbjct 17514414 GTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCCTCCAGCTGTTTCCCA 17514355
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || |||||||| || || || || ||||| || |||||||||||||| ||
Sbjct 17514354 GCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCCTTG 17514295
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | || || || | || ||||| || ||||| || || || ||||| ||
Sbjct 17514294 ACGTTATCGATTGTGTC-TGAGCTCTCAACCTCAAGAGTAATGGTTTTCCCGGTAAGGGT 17514236
Query 104542 TTTTACAAATATCTGCAT 104559
||| ||||| ||||||||
Sbjct 17514235 TTTCACAAAAATCTGCAT 17514218
Score = 120 bits (132), Expect = 7e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| ||||| ||||| | | ||| | ||| || || || ||||| |||
Sbjct 17514642 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCA 17514583
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || ||||||||||| || ||||| || ||||| || ||||||||||| || ||
Sbjct 17514582 GCGAAGATGAGCCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTC 17514523
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | || || || | || ||||| | ||||||||||| || || | ||
Sbjct 17514522 ACGTTGTCGATTGTGTC-TGAGCTCTCAACCTCCAAGGTAATAGTCTTGCCTGTCAAAGT 17514464
Query 104542 TTTTACAAATATCTGCAT 104559
|| |||||||| |||||
Sbjct 17514463 CTTCACAAATATTTGCAT 17514446
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | ||||| || || || || || || || | || || | ||||||
Sbjct 17514201 AGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCT 17514142
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || ||||| || ||||| || || ||||| || || || || || ||||| || |||
Sbjct 17514141 TCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC 17514082
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| || || || || || | || || | || ||||| | || || ||
Sbjct 17514081 TGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTT 17514022
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || ||||| ||||||||
Sbjct 17514021 TTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
>seq3
Length=15215380
Score = 131 bits (144), Expect = 4e-25
Identities = 151/201 (75%), Gaps = 7/201 (3%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT-CTACCGTCTTCTAGTTGTTTTCC 104421
||||| ||||||||||| ||||| || | || ||| | ||| ||||| || || || ||
Sbjct 11243910 GTAGACTCTTTCTGAATGTTATAATCCGCTAAAGTCGCGACCATCTTCGAGCTGATTCCC 11243851
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
||||| ||||||||||| || || || | || ||||||||||| |||||||| || ||
Sbjct 11243850 GGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTTATCTTGAATCTTGGCCTT 11243791
Query 104482 TACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
||||| || | |||| ||| ||| ||||| || || || |||||||| || |
Sbjct 11243790 CACATTATCAATCATATCAGAGCT---TTCAACCTCAAGAGTGATGGTCTTACCCGTCAA 11243734
Query 104539 TGTTTTTACAAATATCTGCAT 104559
|| || ||||| ||||||||
Sbjct 11243733 AGTCTTGACAAAGATCTGCAT 11243713
Score = 89.7 bits (98), Expect = 1e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
||||| || || |||||||| || || ||||| || | ||| ||||| ||| |||||
Sbjct 3297958 CCTTCCTTGTCTTGAATCTTGGCCTTGACATTATCGATGGTGTCGCTGCTTTCGACCTCG 3298017
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || || ||||| ||||| || ||||| ||||| |||||||||||
Sbjct 3298018 AGAGTGATGGTCTTGCCAGTTAGGGTTTTCACAAAGATCTGCATTTT 3298064
>seq1
Length=19836964
Score = 113 bits (124), Expect = 1e-19
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || ||||| | ||| |||| || |||||||||||||| |||
Sbjct 10373769 GTCGACTCTTTCTGGATGTTGTAGTCCGCTAGCGTTCGGCCATCTTCTAGTTGTTTACCA 10373828
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
||||| || | ||||||||||||||| |||||||| ||||| |||||
Sbjct 10373829 GCAAATATCAACCTCTGTTGATCAGGTGGTATTCCCTCTTTGTCCTG 10373875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151376905910556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |