Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq762 102 7e-17
seq6 102 7e-17
seq5 95.1 1e-14
>seq1
Length=19836964
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || ||||| || |||||| || ||||||||||| || | | | | |||| |||
Sbjct 7692203 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCC 7692144
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|||||||| ||| || |||| | ||||||||||||| ||| | | |||||||||
Sbjct 7692143 AGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGG 7692084
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
|| ||| ||| | | | || || |||| ||||| ||| | ||||| || ||
Sbjct 7692083 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTC 7692024
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||||||||| || |||||
Sbjct 7692023 CCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995
>seq762
Length=4953
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | || | |||||| || |||||| || ||||||||||| ||
Sbjct 142 ACCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGC 201
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| ||| ||||||||| |||||| ||| || | || | | |||||||||| ||
Sbjct 202 CAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGG 261
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677
| || |||||| ||| || || |||| | | | | ||||| || | |||
Sbjct 262 AATACCTTCCTTATCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 320
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || ||||||||||| || || || |||||||||
Sbjct 321 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATC 370
>seq6
Length=18523719
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | ||| | || | |||||| || |||||| || ||||||||||| ||
Sbjct 1438278 ACCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGC 1438337
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| ||| ||||||||| |||||| ||| || | || | | |||||||||| ||
Sbjct 1438338 CAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGG 1438397
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677
| || |||||| ||| || || |||| | | | | ||||| || | |||
Sbjct 1438398 AATACCTTCCTTATCCTGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 1438456
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || ||||||||||| || || || |||||||||
Sbjct 1438457 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATC 1438506
>seq5
Length=16150104
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | ||| || || |||||| ||||||||||| || || | || |||| ||
Sbjct 6389264 CACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTC 6389205
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||| || ||| || ||||||| |||||||| ||| || | | |||||||||
Sbjct 6389204 CAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTG 6389145
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| ||| |||| | | ||||| |||| || || ||| | |||||||| ||
Sbjct 6389144 GATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTT 6389085
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || |||||||| || ||||||||
Sbjct 6389084 CCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421243719763457
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |