Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4 116 2e-21 seq2 116 2e-21 seq1 116 2e-21 seq7 114 7e-21 seq6 111 8e-20 seq322 100 1e-16 seq152 100 1e-16 seq3 100 1e-16 seq5 96.9 2e-15 >seq4 Length=14320061 Score = 116 bits (128), Expect = 2e-21 Identities = 83/96 (86%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||||||||||| || |||||||||| | | |||||||| |||||||||||||| Sbjct 484528 TTAATAAAAAATTTAAAATCATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 484587 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 484588 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 484623 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| ||||||||| || | | |||||||| |||||||||||||||||||||| Sbjct 541048 TAAAAAAT-AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 540990 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||| ||||||||||||||| |||| || Sbjct 540989 CGCTCTAACCAACTGAGCTAATAGGCCATC 540960 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||| || | ||||||||||| |||||||||||||||||||||||| Sbjct 538954 AAAAA--AAACTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 538897 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| ||||||||||||||| |||| || Sbjct 538896 CTCTAACCAACTGAGCTAATAGGCCATC 538869 >seq2 Length=13294645 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11447 AAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||| |||| |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 3871585 AAAACAAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 3871526 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||| |||||||||||||||||||||| || Sbjct 3871525 CTCTAACCAACTGAGCTAATGGGCCGTTGA 3871496 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 9627127 AAATGGCCTATGTAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 9627068 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 9627067 AACTGAGCTAATAGGCC 9627051 >seq1 Length=19836964 Score = 116 bits (128), Expect = 2e-21 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 ||| |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 4192541 ATCCAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 4192600 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| Sbjct 4192601 AACCAACTGAGCTAATGGGCC 4192621 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 13653806 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 13653864 >seq7 Length=17055980 Score = 114 bits (126), Expect = 7e-21 Identities = 86/98 (88%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 11434 TAGA-ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| ||||| ||||| |||| ||||||||| | | |||||||| |||||||||||| Sbjct 15777818 TAGATATTAAAGAAAAA--AAATATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGT 15777761 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 15777760 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 15777723 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 11922274 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 11922333 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 11922334 CAACTGAGCTAATAGGCC 11922351 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 11922451 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 11922510 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 11922511 CAACTGAGCTAATAGGCC 11922528 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 1256181 AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1256122 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1256121 CAACTGAGCTAATAGGCC 1256104 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 1272957 AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1273016 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1273017 CAACTGAGCTAATAGGCC 1273034 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1273939 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1273997 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 11922135 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 11922193 >seq6 Length=18523719 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| | |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 9474959 AAAAAACAAGT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 9474901 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 9474900 CTCTAACCAACTGAGCTAATGGGCC 9474876 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||| ||||| || | | |||||||| ||||||||||||||||||||||| Sbjct 13425533 AAAAAAT-AAAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 13425591 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 13425592 GCTCTAACCAACTGAGCTAATAGGCCG 13425618 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||| | | |||| ||||| || | | |||||||| |||||||||||||||||||||| Sbjct 13425388 AAATATTAAAATATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 13425447 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 13425448 CGCTCTAACCAACTGAGCTAATAGGCC 13425474 >seq322 Length=21352 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 7799 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7858 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 7859 TGAGCTAATGGGCC 7872 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 9897 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9956 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 9957 TGAGCTAATGGGCC 9970 >seq152 Length=45339 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 40677 AAATGGCCTATGTAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 40618 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 40617 AACTGAGCTAATAGGCC 40601 >seq3 Length=15215380 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 14872907 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14872966 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 14872967 TGAGCTAATGGGCC 14872980 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 14875005 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14875064 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 14875065 TGAGCTAATGGGCC 14875078 >seq5 Length=16150104 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || ||| ||||| || | | |||||||| |||||||||||||||||||| Sbjct 11546735 AATAAATAA--AAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCAC 11546678 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 11546677 GACGCTCTAACCAACTGAGCTAATAGGCC 11546649 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486556651732