Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 2e-21
seq2 116 2e-21
seq1 116 2e-21
seq7 114 7e-21
seq6 111 8e-20
seq322 100 1e-16
seq152 100 1e-16
seq3 100 1e-16
seq5 96.9 2e-15
>seq4
Length=14320061
Score = 116 bits (128), Expect = 2e-21
Identities = 83/96 (86%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 11439 TTAATAAAAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
|||||||||||| || |||||||||| | | |||||||| ||||||||||||||
Sbjct 484528 TTAATAAAAAATTTAAAATCATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 484587
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||||||||
Sbjct 484588 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 484623
Score = 107 bits (118), Expect = 1e-18
Identities = 78/90 (87%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||||| ||||||||| || | | |||||||| ||||||||||||||||||||||
Sbjct 541048 TAAAAAAT-AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 540990
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||| ||||||||||||||| |||| ||
Sbjct 540989 CGCTCTAACCAACTGAGCTAATAGGCCATC 540960
Score = 104 bits (114), Expect = 1e-17
Identities = 76/88 (86%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| ||||| || | ||||||||||| ||||||||||||||||||||||||
Sbjct 538954 AAAAA--AAACTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACG 538897
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||| ||||||||||||||| |||| ||
Sbjct 538896 CTCTAACCAACTGAGCTAATAGGCCATC 538869
>seq2
Length=13294645
Score = 116 bits (128), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 11447 AAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||| |||| |||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 3871585 AAAACAAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 3871526
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534
|||| |||||||||||||||||||||| ||
Sbjct 3871525 CTCTAACCAACTGAGCTAATGGGCCGTTGA 3871496
Score = 100 bits (110), Expect = 1e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 9627127 AAATGGCCTATGTAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 9627068
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 9627067 AACTGAGCTAATAGGCC 9627051
>seq1
Length=19836964
Score = 116 bits (128), Expect = 2e-21
Identities = 74/81 (91%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508
||| |||||||||||| | | |||||||| |||||||||||||||||||||||||||||
Sbjct 4192541 ATCCAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 4192600
Query 11509 RACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||
Sbjct 4192601 AACCAACTGAGCTAATGGGCC 4192621
Score = 91.5 bits (100), Expect = 8e-14
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 13653806 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 13653864
>seq7
Length=17055980
Score = 114 bits (126), Expect = 7e-21
Identities = 86/98 (88%), Gaps = 4/98 (4%)
Strand=Plus/Minus
Query 11434 TAGA-ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491
|||| ||||| ||||| |||| ||||||||| | | |||||||| ||||||||||||
Sbjct 15777818 TAGATATTAAAGAAAAA--AAATATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGT 15777761
Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||| ||||||||||||||||||||
Sbjct 15777760 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 15777723
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 11922274 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 11922333
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 11922334 CAACTGAGCTAATAGGCC 11922351
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 11922451 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 11922510
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 11922511 CAACTGAGCTAATAGGCC 11922528
Score = 98.7 bits (108), Expect = 5e-16
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||| || | | |||||||| |||||||||||||||||||||||||||| ||
Sbjct 1256181 AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1256122
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 1256121 CAACTGAGCTAATAGGCC 1256104
Score = 98.7 bits (108), Expect = 5e-16
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||| || | | |||||||| |||||||||||||||||||||||||||| ||
Sbjct 1272957 AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1273016
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 1273017 CAACTGAGCTAATAGGCC 1273034
Score = 91.5 bits (100), Expect = 8e-14
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1273939 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1273997
Score = 91.5 bits (100), Expect = 8e-14
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 11922135 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 11922193
>seq6
Length=18523719
Score = 111 bits (122), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| | |||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 9474959 AAAAAACAAGT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 9474901
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 9474900 CTCTAACCAACTGAGCTAATGGGCC 9474876
Score = 102 bits (112), Expect = 4e-17
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| ||| ||||| || | | |||||||| |||||||||||||||||||||||
Sbjct 13425533 AAAAAAT-AAAGTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 13425591
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| ||||||||||||||| |||||
Sbjct 13425592 GCTCTAACCAACTGAGCTAATAGGCCG 13425618
Score = 93.3 bits (102), Expect = 2e-14
Identities = 73/87 (84%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||| | | |||| ||||| || | | |||||||| ||||||||||||||||||||||
Sbjct 13425388 AAATATTAAAATATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGA 13425447
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||| ||||
Sbjct 13425448 CGCTCTAACCAACTGAGCTAATAGGCC 13425474
>seq322
Length=21352
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 7799 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7858
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 7859 TGAGCTAATGGGCC 7872
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 9897 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9956
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 9957 TGAGCTAATGGGCC 9970
>seq152
Length=45339
Score = 100 bits (110), Expect = 1e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 40677 AAATGGCCTATGTAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 40618
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 40617 AACTGAGCTAATAGGCC 40601
>seq3
Length=15215380
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 14872907 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14872966
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 14872967 TGAGCTAATGGGCC 14872980
Score = 100 bits (110), Expect = 1e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 14875005 TGGCCCATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14875064
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 14875065 TGAGCTAATGGGCC 14875078
>seq5
Length=16150104
Score = 96.9 bits (106), Expect = 2e-15
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| || ||| ||||| || | | |||||||| ||||||||||||||||||||
Sbjct 11546735 AATAAATAA--AAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCAC 11546678
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 11546677 GACGCTCTAACCAACTGAGCTAATAGGCC 11546649
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261486556651732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |