Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq642 120 3e-22 seq762 116 3e-21 seq3 109 5e-19 seq5 102 7e-17 seq4 95.1 1e-14 seq1 87.8 2e-12 >seq6 Length=18523719 Score = 138 bits (152), Expect = 1e-27 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||| | ||| | || |||||||| || | || ||||| | || ||||| || Sbjct 17514432 CGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATC-CGCA-AGTGTGCGAC 17514375 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||||||| || | ||||| | ||| || || ||||| || || ||||| | Sbjct 17514374 CATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCT 17514315 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| |||||||||||| ||| ||||| | | || || |||| || | Sbjct 17514314 TGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAACCTCAAGAGTAA 17514255 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || ||||| ||||||||||| |||||||| Sbjct 17514254 TGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| |||||| || ||| | || ||| Sbjct 1443199 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTCC 1443258 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| |||||| | ||||| | ||||||||||| ||||||||||| || ||||| | Sbjct 1443259 AACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGG 1443318 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || ||| | ||| ||||||| | || || || | ||||| || || Sbjct 1443319 ATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTC 1443378 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||| Sbjct 1443379 CCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| |||||| || ||| | ||||||| ||| |||||| Sbjct 1438309 GTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCCAACTGCTTTCCG 1438368 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | ||| |||||||| |||||||||||||| || || | || || || || Sbjct 1438369 GCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGATCTTGGCTTTA 1438428 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||||| | || || || | |||||||| || || || ||||| Sbjct 1438429 ACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 1438488 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 1438489 TTGACGAAGATCTGCAT 1438505 Score = 105 bits (116), Expect = 6e-18 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| | || | |||||| || | || || || || || | Sbjct 17514001 AAAAATCTGCATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGAT 17513942 Query 94828 GTTATAATC-GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 ||| || || || ||||| || ||| || ||||| || ||| | ||||| | || Sbjct 17513941 GTTGTAGTCAGCG---AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCT 17513885 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 ||||| || |||||||| || ||||| || | || ||||| ||||| | ||| || Sbjct 17513884 CTGCTGGTCCGGAGGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGT 17513825 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||||| | ||||| || | |||||||| || || || | ||||||||||||||| || Sbjct 17513824 GTCAGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTG 17513765 Query 95005 CAT 95007 ||| Sbjct 17513764 CAT 17513762 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| |||||||| | ||| ||||| | ||| || || |||||||| || Sbjct 17514186 GTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCC 17514127 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | ||| ||||| ||||| || || ||||| ||||| | ||| || |||||| Sbjct 17514126 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTG 17514067 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | || || || | ||||||||||| || || || || Sbjct 17514066 ACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTC 17514007 Query 94991 TTCACAAAGATCTGCAT 95007 || ||||| |||||||| Sbjct 17514006 TTGACAAAAATCTGCAT 17513990 >seq642 Length=6837 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| |||||| || ||| | || ||| Sbjct 160 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTCC 219 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| |||||| | ||||| | ||||||||||| ||||||||||| || ||||| | Sbjct 220 AACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGAATACCCTCCTTGTCCTGG 279 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || ||| | ||| ||||||| | || || || | ||||| || || Sbjct 280 ATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTC 339 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||| Sbjct 340 CCGGTGAGAGTCTTAACGAAGATCTGCAT 368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| || || ||||| || || || || || || ||||| | |||||| ||| Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| | ||| ||||||| ||||| || | ||||| || ||||| || || Sbjct 61 TTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAGG 120 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| || ||||||||||| Sbjct 121 GTTTTGACGAAGATCTGCAT 140 >seq762 Length=4953 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| |||||| || ||| | ||||||| ||| |||||| Sbjct 173 GTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCCTCCAACTGCTTTCCG 232 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | ||| |||||||| |||||||||||||| || || | || || || || Sbjct 233 GCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCCTGGATCTTGGCTTTA 292 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||||| | || || || | |||||||| || || || ||||| Sbjct 293 ACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 352 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 353 TTGACGAAGATCTGCAT 369 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| || || ||||| || || || || || || ||||| | || || ||| Sbjct 2 CCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTCGCC 61 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| | ||| ||||||| ||||| || | ||||| || ||||| || || Sbjct 62 TTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAGC 121 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| || ||||||||||| Sbjct 122 GTTTTGACGAAGATCTGCAT 141 >seq3 Length=15215380 Score = 109 bits (120), Expect = 5e-19 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | || | || ||||||||||| | ||| ||||| | ||| | | | Sbjct 11192545 CGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGGCCA 11192604 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||| ||| ||||||| | || ||||| || ||| | || ||||| ||| Sbjct 11192605 TCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCCTTG 11192664 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||| | | | | ||||| | ||||| |||| || ||| Sbjct 11192665 TCTTGGATCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCGACCTCAAGAGTTATG 11192724 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| || |||||||| ||||| Sbjct 11192725 GTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758 Score = 102 bits (112), Expect = 7e-17 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||| | ||| | || ||||||||||| | ||| ||||| || || || || Sbjct 11243699 CGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTG-CA-AGGGTGCGAC 11243642 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| |||||||| || | ||||| ||||| | || || || | || ||||| | Sbjct 11243641 CATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCT 11243582 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| |||| ||| || | |||||||| | || || || | || | Sbjct 11243581 TGTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAA 11243522 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| || ||||||||||| || ||||| Sbjct 11243521 TGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA-ATCCTCCAGC 94861 ||| | |||||| || || || | ||||||||| ||| | ||| | ||| || ||| Sbjct 11243917 GTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGCTAA-AGTCGCGACCATCTTCGAGC 11243859 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| ||||||||| || ||||| || || | || |||||||| || | ||| Sbjct 11243858 TGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTTGGATGCCTTCTTTATCTTGAATC 11243799 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || ||||| || | | | |||| | || || |||| |||||||| || || Sbjct 11243798 TTGGCCTTCACATTATCAATCATATCAGAGCTTTCAACCTCAAGAGTGATGGTCTTACCC 11243739 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||| || |||||||||||||| Sbjct 11243738 GTCAAAGTCTTGACAAAGATCTGCAT 11243713 >seq5 Length=16150104 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||||||| ||| | || ||||||| ||||| || || ||||| || || ||| Sbjct 6389209 TCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTG 6389150 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || ||||| | ||| ||||| | | ||||| |||| || ||| Sbjct 6389149 TCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATG 6389090 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || |||||||| |||||||||||| || Sbjct 6389089 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTTT 6389051 >seq4 Length=14320061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | || || |||| ||||| || ||||| || ||||| ||| Sbjct 6306181 TCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTG 6306240 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | ||| ||||| | | ||||| || | || || Sbjct 6306241 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATT 6306300 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||| ||||||||||| Sbjct 6306301 GTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335 >seq1 Length=19836964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||||| || | |||||||| | || || ||||| || | ||| ||||| | Sbjct 7692223 CTCCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATC-C 7692165 Query 94839 TCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||||| | || |||||||| || ||| | || || | | |||||||| || Sbjct 7692164 GCG-AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGG 7692106 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| ||||| | || || ||||| || | ||| ||||| | || Sbjct 7692105 CGGGATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTC 7692046 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || || || || || |||||||||||||| ||||| Sbjct 7692045 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283035496520