Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 163 4e-36 seq6 154 2e-33 seq5 120 5e-23 seq18 113 7e-21 seq4 113 7e-21 >seq1 Length=19836964 Score = 163 bits (180), Expect = 4e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||||||||||||||| || || || || || |||||| | ||||| ||| Sbjct 2192568 GATAACATCCAAGGAATCACCAAGCCTGCGATTCGGCGACTTGCTCGTAGAGGTGGCGTC 2192627 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||| | |||| || |||| | | ||| | |||||||||||| || Sbjct 2192628 AAGCGTATAAGCGGACTCATCTACGAGGAGACAAGAGGTGTCCTCAAGATCTTCCTCGAG 2192687 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| ||| ||| || ||| ||||||||||| | ||||| |||||| || Sbjct 2192688 AATGTCATCCGTGACGCTGTCACCTACACCGAGCACGCCCGGAGGAAGACCGTCACCGCC 2192747 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| ||||| | ||||| |||| | || ||||| || ||||| Sbjct 2192748 ATGGATGTTGTCTATGCTTTGAAGAGGCAAGGACGTACCCTCTACGGTTTCGGCGGTTAA 2192807 >seq6 Length=18523719 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 10700236 GAGATAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 10700295 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| || | || | |||||||| | Sbjct 10700296 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGAGGCGTCCTCAAGATCTTTTTGG 10700355 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||| || || || ||||||||||| | | |||||||||||| Sbjct 10700356 AGAACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 10700415 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | ||||| |||||||||| |||| | ||||| | | | | ||||| || || ||| Sbjct 10700416 CTATGGACGTCGTCTATGCCCTGAAGAGGCAAGGGAGGACGCTCTATGGGTTCGGCGGTT 10700475 Query 16698 AATCTTCTAATCAAACTTCG 16717 || ||| | || ||||| Sbjct 10700476 AAGAGTCTTTTGAAGCTTCG 10700495 >seq5 Length=16150104 Score = 120 bits (132), Expect = 5e-23 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| ||||||||||| ||||| || ||||| || Sbjct 3543572 GCCAAGAGGCATCGGAAAGTTCTCCGAGACAACATCCAAGGGATCACTAAACCAGCGATT 3543513 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | || || || |||||| || ||| ||| |||| || |||| | Sbjct 3543512 CGTCGTCTTGCGAGAAGAGGAGGTGTGAAGCGTATCAGTGGTTTGATCTACGAGGAGACT 3543453 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||| ||| ||| || |||| ||| || | || || ||| Sbjct 3543452 CGCGGCGTTCTCAAGATCTTTCTCGAGAATGTGATCCGTGACGCCGTTACTTACACGGAG 3543393 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || || || || || ||||||| ||||||| || Sbjct 3543392 CACGCTCGCCGGAAAACAGTTACGGCCATGGACGTCGTCTACGC 3543349 >seq18 Length=123394 Score = 113 bits (124), Expect = 7e-21 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || || | | || |||||| | || || | Sbjct 25421 GAGACAACATCCAAGGGATCACGAAGCCTGCGATTAGGAGACTCGCTCGTAGAGGAGGCG 25480 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || ||| |||| ||||| | | | |||||||||||||| ||| Sbjct 25481 TGAAGCGTATCAGCGGCTTGATCTACGAAGAAACAAGAGGGGTTTTGAAGATCTTTCTCG 25540 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || | || || |||||||| | | ||||| || || Sbjct 25541 AGAATGTCATCAGAGACGCCGTGACTTACACAGAGCACGCGAGGAGGAAGACGGTGACAG 25600 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| ||||||| || ||||| | ||||| || | ||||||| || || ||| Sbjct 25601 CGATGGATGTCGTCTACGCTTTGAAGAGGCAAGGACGCACTCTTTATGGATTCGGTGGTT 25660 Query 16698 AA 16699 || Sbjct 25661 AA 25662 >seq4 Length=14320061 Score = 113 bits (124), Expect = 7e-21 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| || || | | || |||||| | || || | Sbjct 13278576 GAGACAACATCCAAGGGATCACGAAGCCTGCGATTAGGAGACTCGCTCGTAGAGGAGGCG 13278635 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || ||| |||| ||||| | | | |||||||||||||| ||| Sbjct 13278636 TGAAGCGTATCAGCGGCTTGATCTACGAAGAAACAAGAGGGGTTTTGAAGATCTTTCTCG 13278695 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || || | || || |||||||| | | ||||| || || Sbjct 13278696 AGAATGTCATCAGAGACGCCGTGACTTACACAGAGCACGCGAGGAGGAAGACGGTGACAG 13278755 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| ||||||| || ||||| | ||||| || | ||||||| || || ||| Sbjct 13278756 CGATGGATGTCGTCTACGCTTTGAAGAGGCAAGGACGCACTCTTTATGGATTCGGTGGTT 13278815 Query 16698 AA 16699 || Sbjct 13278816 AA 13278817 Score = 91.5 bits (100), Expect = 2e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || || || || || || || ||||| || || |||||| | || | | || Sbjct 9829430 TCTCCGGGACAATATTCAGGGGATTACAAAGCCGGCGATTCGTCGTTTAGCGAGAAGAGG 9829489 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| || || ||| |||| || |||| ||| | ||| | |||||||| Sbjct 9829490 TGGTGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTGCTTAAGATCTT 9829549 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| || || | ||| || || || || ||||| || || || || || Sbjct 9829550 CCTCGAGAATGTGATTCGTGACGCCGTCACTTACACTGAGCATGCCCGCCGGAAAACCGT 9829609 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 ||| | |||||| | || ||||| ||||| Sbjct 9829610 CACAGCGATGGATGTGGTGTATGCGTTGAA 9829639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073867854701