Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1 163 4e-36
seq6 154 2e-33
seq5 120 5e-23
seq18 113 7e-21
seq4 113 7e-21
>seq1
Length=19836964
Score = 163 bits (180), Expect = 4e-36
Identities = 180/240 (75%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||||||||||||||||||||| || || || || || |||||| | ||||| |||
Sbjct 2192568 GATAACATCCAAGGAATCACCAAGCCTGCGATTCGGCGACTTGCTCGTAGAGGTGGCGTC 2192627
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| | ||| | |||| || |||| | | ||| | |||||||||||| ||
Sbjct 2192628 AAGCGTATAAGCGGACTCATCTACGAGGAGACAAGAGGTGTCCTCAAGATCTTCCTCGAG 2192687
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| ||| ||| || ||| ||||||||||| | ||||| |||||| ||
Sbjct 2192688 AATGTCATCCGTGACGCTGTCACCTACACCGAGCACGCCCGGAGGAAGACCGTCACCGCC 2192747
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | |||||||| ||||| | ||||| |||| | || ||||| || |||||
Sbjct 2192748 ATGGATGTTGTCTATGCTTTGAAGAGGCAAGGACGTACCCTCTACGGTTTCGGCGGTTAA 2192807
>seq6
Length=18523719
Score = 154 bits (170), Expect = 2e-33
Identities = 190/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||||||||| || || || | |||||||| | |||||||
Sbjct 10700236 GAGATAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 10700295
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| || |||| || | || | |||||||| |
Sbjct 10700296 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGAGGCGTCCTCAAGATCTTTTTGG 10700355
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| |||| ||| || || || ||||||||||| | | ||||||||||||
Sbjct 10700356 AGAACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 10700415
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| ||||| |||||||||| |||| | ||||| | | | | ||||| || || |||
Sbjct 10700416 CTATGGACGTCGTCTATGCCCTGAAGAGGCAAGGGAGGACGCTCTATGGGTTCGGCGGTT 10700475
Query 16698 AATCTTCTAATCAAACTTCG 16717
|| ||| | || |||||
Sbjct 10700476 AAGAGTCTTTTGAAGCTTCG 10700495
>seq5
Length=16150104
Score = 120 bits (132), Expect = 5e-23
Identities = 161/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||| ||||| ||||||||||| ||||| || ||||| ||
Sbjct 3543572 GCCAAGAGGCATCGGAAAGTTCTCCGAGACAACATCCAAGGGATCACTAAACCAGCGATT 3543513
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || | | || || || |||||| || ||| ||| |||| || |||| |
Sbjct 3543512 CGTCGTCTTGCGAGAAGAGGAGGTGTGAAGCGTATCAGTGGTTTGATCTACGAGGAGACT 3543453
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| | |||||||| ||| ||| || |||| ||| || | || || |||
Sbjct 3543452 CGCGGCGTTCTCAAGATCTTTCTCGAGAATGTGATCCGTGACGCCGTTACTTACACGGAG 3543393
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|||||| || || || || || ||||||| ||||||| ||
Sbjct 3543392 CACGCTCGCCGGAAAACAGTTACGGCCATGGACGTCGTCTACGC 3543349
>seq18
Length=123394
Score = 113 bits (124), Expect = 7e-21
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||| ||||| ||||| || || | | || |||||| | || || |
Sbjct 25421 GAGACAACATCCAAGGGATCACGAAGCCTGCGATTAGGAGACTCGCTCGTAGAGGAGGCG 25480
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || || ||| |||| ||||| | | | |||||||||||||| |||
Sbjct 25481 TGAAGCGTATCAGCGGCTTGATCTACGAAGAAACAAGAGGGGTTTTGAAGATCTTTCTCG 25540
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || ||| || || | || || |||||||| | | ||||| || ||
Sbjct 25541 AGAATGTCATCAGAGACGCCGTGACTTACACAGAGCACGCGAGGAGGAAGACGGTGACAG 25600
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| ||||||| || ||||| | ||||| || | ||||||| || || |||
Sbjct 25601 CGATGGATGTCGTCTACGCTTTGAAGAGGCAAGGACGCACTCTTTATGGATTCGGTGGTT 25660
Query 16698 AA 16699
||
Sbjct 25661 AA 25662
>seq4
Length=14320061
Score = 113 bits (124), Expect = 7e-21
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||| ||||| ||||| || || | | || |||||| | || || |
Sbjct 13278576 GAGACAACATCCAAGGGATCACGAAGCCTGCGATTAGGAGACTCGCTCGTAGAGGAGGCG 13278635
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || || ||| |||| ||||| | | | |||||||||||||| |||
Sbjct 13278636 TGAAGCGTATCAGCGGCTTGATCTACGAAGAAACAAGAGGGGTTTTGAAGATCTTTCTCG 13278695
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || ||| || || | || || |||||||| | | ||||| || ||
Sbjct 13278696 AGAATGTCATCAGAGACGCCGTGACTTACACAGAGCACGCGAGGAGGAAGACGGTGACAG 13278755
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| ||||||| || ||||| | ||||| || | ||||||| || || |||
Sbjct 13278756 CGATGGATGTCGTCTACGCTTTGAAGAGGCAAGGACGCACTCTTTATGGATTCGGTGGTT 13278815
Query 16698 AA 16699
||
Sbjct 13278816 AA 13278817
Score = 91.5 bits (100), Expect = 2e-14
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| || || || || || || || || ||||| || || |||||| | || | | ||
Sbjct 9829430 TCTCCGGGACAATATTCAGGGGATTACAAAGCCGGCGATTCGTCGTTTAGCGAGAAGAGG 9829489
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| || |||||| || || ||| |||| || |||| ||| | ||| | ||||||||
Sbjct 9829490 TGGTGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTGCTTAAGATCTT 9829549
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
|||| ||| || || | ||| || || || || ||||| || || || || ||
Sbjct 9829550 CCTCGAGAATGTGATTCGTGACGCCGTCACTTACACTGAGCATGCCCGCCGGAAAACCGT 9829609
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662
||| | |||||| | || ||||| |||||
Sbjct 9829610 CACAGCGATGGATGTGGTGTATGCGTTGAA 9829639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073867854701
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |