Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq4 89.7 6e-13 seq7 87.8 2e-12 >seq2 Length=13294645 Score = 187 bits (206), Expect = 3e-42 Identities = 409/605 (68%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||| || ||||||||||| || | || ||||||| || | |||||||| || Sbjct 9186735 ATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAG 9186676 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || | ||||||||| || || |||||||| ||||| || || || ||| || || Sbjct 9186675 GTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGAGCAGAAGCTACCGGAG 9186616 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGCTGTC 33476 |||||||| ||||| || || || || | | |||||| || || | | | | | Sbjct 9186615 AAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGAT-CC 9186557 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 || |||||||| ||||| | ||| ||||| || ||||| || ||||| || || Sbjct 9186556 ATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 ||||||| || | | || || | || || | ||||| |||| | ||||| || Sbjct 9186496 GCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTA 9186437 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || || ||||| ||||| || ||||| || ||||||||| | ||||| | Sbjct 9186436 CATCTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGA 9186377 Query 33657 AATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | || || || | ||| |||||| || | ||| || || |||||||| || Sbjct 9186376 GACTTGCACATC-GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGG 9186318 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTC 33774 | || || || || | ||| ||||| || || | | |||| | | || |||| || | | Sbjct 9186317 CGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGT-TTAGATTCTCC 9186259 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || || |||| || | ||| |||||||| | ||||| || ||||| || ||| Sbjct 9186258 CAGTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCC 9186199 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 || || ||||| | |||||| | |||||||| ||||| ||| ||||| | ||| Sbjct 9186198 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTGGG 9186139 Query 33895 TTTGG 33899 |||| Sbjct 9186138 GTTGG 9186134 >seq4 Length=14320061 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | || | ||| || | || | || | || |||||| | |||||| Sbjct 321166 TCCTCCTTGGTCAACATAACGAGCCGTATCGTTGAATACGCGCAGCATTGGGACAATACC 321107 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || || | ||||| || || || ||||||||| | ||||| |||||| || ||| Sbjct 321106 ATTAGACGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACTGA 321047 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || ||| || | || || ||||| || |||||||| Sbjct 321046 AACACCAATACCCCCAGCGGATTTGCTTATAACAGCACACTCTTTTAGTGTTTCATAGAT 320987 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 |||||| ||||||||||| |||| | ||||| ||||| Sbjct 320986 ACCCTCAATGCTATCATCTTTCATACAGATCAGAAAGCAGCT 320945 >seq7 Length=17055980 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||||| ||| || | || ||||| || || || |||||| | ||| | || || Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | || || || || |||||| | ||| ||||| || || | || | ||| | Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||||| |||||||| | ||| | || | ||| || | ||| ||||| || | Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCA-CTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAA 15540345 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| || | ||| ||| || || || || || || Sbjct 15540344 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGATCATAGATGAT 15540296 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| ||||| || || || || |||||| | || || || || || ||| Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | |||||||||||| || ||| || | || || ||| | ||||||||| || Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || ||||||||||| ||||| | ||||| ||||| Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935854574120