Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq4 98.7 1e-15 seq5 82.4 7e-11 >seq6 Length=18523719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| ||||| || || | ||||| |||| | || Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| |||||| || ||||| || || ||||| || || Sbjct 17513822 GACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCAG 17513881 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || ||| || || || ||||||| | | | || ||||| ||| Sbjct 17513882 CAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACAAC 17513941 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || ||||| |||| || | |||||||| || Sbjct 17513942 ATCCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTTAGAGGCGG 17513988 >seq4 Length=14320061 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 26863 ACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG 26922 |||||||||| ||||| || ||||||||||| || || | | || || ||||| |||| Sbjct 10684939 ACAAAGAAGGTATACCACCAGATCAACAAAGGCTGATATTTGCTGGTAAGCAACTTGAAG 10684880 Query 26923 ATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||| ||| | | ||| || || ||||| || ||||| |||||| | || |||||| || Sbjct 10684879 ATGGCCGAACCCT-AGCGGATTACAACATCCAGAAAGAGTCTACTCTTCACCTGGTCTTG 10684821 Query 26982 AGACTTAGAGGAGGAA 26997 || |||||||| |||| Sbjct 10684820 AGGCTTAGAGGTGGAA 10684805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 || |||| ||||| | || || ||||| |||| || || | || ||| |||| | | Sbjct 6306343 AAGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTCGAGGTCG 6306284 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | || |||||||||||| | ||||| ||||| ||||| ||||| || |||| Sbjct 6306283 AGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTC 6306224 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 | || || || || | |||| || ||| || || ||||| || | | | | || || Sbjct 6306223 CGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACCCTCGCCG 6306164 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || || ||||| || | || || ||||| Sbjct 6306163 ACTACAACATCCAGAAGGAATCGACCCTTCACCTCGTCCT 6306124 >seq5 Length=16150104 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | ||||| Sbjct 6389052 AACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATCC 6389111 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| || || || || || || Sbjct 6389112 TCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGAC 6389171 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || | |||| || ||| ||||| || ||||| | | | || |||||| Sbjct 6389172 CAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTAC 6389231 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || || | |||||||| || Sbjct 6389232 AACATTCAGAAGGAGTCGACGCTGCATCTGGTGCT 6389266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653682361040