Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq7 114 3e-20
seq3 107 5e-18
>seq7
Length=17055980
Score = 114 bits (126), Expect = 3e-20
Identities = 117/150 (78%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730
||||||||||| ||||| || | | | ||| ||||||||||| | || ||||||
Sbjct 15010644 ATGGCACTTCCTCCATGCCA-CATGTTTGCGCAGTTTTATGTTGCAAATGGAGAGCTTTC 15010586
Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790
||| |||||||||||||| || |||||||| ||||||||||| |||||||| |||||
Sbjct 15010585 ATGTCAAATGTATCAGCGGTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 15010526
Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820
||| | || ||||| ||| | |||||||
Sbjct 15010525 ATACTCCCTTCTTACATGCATCCTCGCTCA 15010496
Score = 89.7 bits (98), Expect = 1e-12
Identities = 154/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
|||||||| ||| ||| || || || | |||||| || || | |||||| ||||
Sbjct 15540643 ATGAAGGATGATAGCATTGAAGGAATATATGACACGCTGAAAGAGTGTGCTGTTATAAGT 15540702
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740
||| || || ||||| ||||| || | ||||| | || ||| | | | ||||||||
Sbjct 15540703 AAGTCAGCTGGGGGAATAGGTGTTTCAGTTCACAACATCCGCGCAACTGGA-AGTTACAT 15540761
Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800
||| |||||| ||| || ||||| | ||||| ||||| || || || | ||||
Sbjct 15540762 TCGTGGCACAAATGGAGCATCTAATGGTATTGTTCCAATGCTACGGGTATTCAATGATAC 15540821
Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840
||| | || || || || || ||||| ||| | ||||||
Sbjct 15540822 TGCTCGCTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 15540860
>seq3
Length=15215380
Score = 107 bits (118), Expect = 5e-18
Identities = 130/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 111706 TTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTC 111765
|||||||| || ||| ||| |||||||||||||||||| | || || ||||| || |
Sbjct 11080390 TTTATGTAGCAGAAGGGGAGCTCTCATGCCAAATGTATCAGGGTTCAGCAGATATGGGCC 11080449
Query 111766 TTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTA 111825
||||||| || ||||| ||||| ||| | || ||||||||| | ||||||| |
Sbjct 11080450 TTGGTGTGCCTTTTAACATTGCTTCCTACTCTCTTCTTACTTGCCTGCTCGCTCACGTGT 11080509
Query 111826 CAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882
||||| || |||||| |||| || | ||| || ||||| || || |||| ||
Sbjct 11080510 GCAATCTTGTTCCTGGTGAAATCATCCATGGTATTGGGGATGCTCACGTGTACAAAA 11080566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303329269239374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |