Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 114 3e-20 seq3 107 5e-18 >seq7 Length=17055980 Score = 114 bits (126), Expect = 3e-20 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||||||||| | || |||||| Sbjct 15010644 ATGGCACTTCCTCCATGCCA-CATGTTTGCGCAGTTTTATGTTGCAAATGGAGAGCTTTC 15010586 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct 15010585 ATGTCAAATGTATCAGCGGTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 15010526 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||| ||| | ||||||| Sbjct 15010525 ATACTCCCTTCTTACATGCATCCTCGCTCA 15010496 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| || || || | |||||| || || | |||||| |||| Sbjct 15540643 ATGAAGGATGATAGCATTGAAGGAATATATGACACGCTGAAAGAGTGTGCTGTTATAAGT 15540702 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 ||| || || ||||| ||||| || | ||||| | || ||| | | | |||||||| Sbjct 15540703 AAGTCAGCTGGGGGAATAGGTGTTTCAGTTCACAACATCCGCGCAACTGGA-AGTTACAT 15540761 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||| || || || | |||| Sbjct 15540762 TCGTGGCACAAATGGAGCATCTAATGGTATTGTTCCAATGCTACGGGTATTCAATGATAC 15540821 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 15540822 TGCTCGCTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 15540860 >seq3 Length=15215380 Score = 107 bits (118), Expect = 5e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 111706 TTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTC 111765 |||||||| || ||| ||| |||||||||||||||||| | || || ||||| || | Sbjct 11080390 TTTATGTAGCAGAAGGGGAGCTCTCATGCCAAATGTATCAGGGTTCAGCAGATATGGGCC 11080449 Query 111766 TTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTA 111825 ||||||| || ||||| ||||| ||| | || ||||||||| | ||||||| | Sbjct 11080450 TTGGTGTGCCTTTTAACATTGCTTCCTACTCTCTTCTTACTTGCCTGCTCGCTCACGTGT 11080509 Query 111826 CAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAA 111882 ||||| || |||||| |||| || | ||| || ||||| || || |||| || Sbjct 11080510 GCAATCTTGTTCCTGGTGAAATCATCCATGGTATTGGGGATGCTCACGTGTACAAAA 11080566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303329269239374