Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq1 102 7e-17 seq6 100 2e-16 >seq4 Length=14320061 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 23979 TAGCCAAA--CAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATC 24035 |||||| | |||| ||||| | || || ||||| |||| || || | |||||| || Sbjct 6306350 TAGCCAGAAGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTC 6306291 Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 || |||||| || |||||||||||| | ||||| ||||| ||||| ||||| Sbjct 6306290 GAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGA 6306231 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || ||||| || || ||| || |||||| || ||| ||||| ||||| || | | | | Sbjct 6306230 ATCCCTCCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACC 6306171 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 || ||| || ||||| || || ||||| || |||| Sbjct 6306170 CTCGCCGACTACAACATCCAGAAGGAATCGACCCTTCA 6306133 >seq1 Length=19836964 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| ||||| |||| || || |||| ||| | || || ||| | Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | || || ||||| ||||| ||||| || || || ||| Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAT 7692111 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||||| || ||| ||||| || ||||| | || | || ||||| Sbjct 7692112 CAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTAC 7692171 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || |||| || || | | ||||||||||| Sbjct 7692172 AACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGGA 7692222 >seq6 Length=18523719 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||| || || | || || |||| |||||| | Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| || ||||| || || ||||| || || Sbjct 17513822 GACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCAG 17513881 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| || ||||||| | | || || || ||| Sbjct 17513882 CAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACAAC 17513941 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||||| ||| Sbjct 17513942 ATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928365545835