Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 2e-18
seq1 102 7e-17
seq6 100 2e-16
>seq4
Length=14320061
Score = 107 bits (118), Expect = 2e-18
Identities = 156/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 23979 TAGCCAAA--CAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATC 24035
|||||| | |||| ||||| | || || ||||| |||| || || | |||||| ||
Sbjct 6306350 TAGCCAGAAGCAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACAATTACCCTC 6306291
Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095
|| |||||| || |||||||||||| | ||||| ||||| ||||| |||||
Sbjct 6306290 GAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGA 6306231
Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155
|| ||||| || || ||| || |||||| || ||| ||||| ||||| || | | | |
Sbjct 6306230 ATCCCTCCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGACGGACGCACC 6306171
Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
|| ||| || ||||| || || ||||| || ||||
Sbjct 6306170 CTCGCCGACTACAACATCCAGAAGGAATCGACCCTTCA 6306133
>seq1
Length=19836964
Score = 102 bits (112), Expect = 7e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
||||||||| | ||||| ||||| |||| || || |||| ||| | || || ||| |
Sbjct 7691992 AAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCG 7692051
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||| ||||| | || || ||||| ||||| ||||| || || || |||
Sbjct 7692052 TCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGAT 7692111
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | ||||||| || ||| ||||| || ||||| | || | || |||||
Sbjct 7692112 CAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTAC 7692171
Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
||||| || || || || || |||| || || | | |||||||||||
Sbjct 7692172 AACATCCAGAAGGAGTCGACGCTTCACTTGGTCCTCCGTCTGAGAGGAGGA 7692222
>seq6
Length=18523719
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| ||||| || || | || || |||| |||||| |
Sbjct 17513762 ATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 17513821
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| |||||| || ||||| || || ||||| || ||
Sbjct 17513822 GACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACCAG 17513881
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || || | || ||| ||||| || ||||||| | | || || || |||
Sbjct 17513882 CAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACAAC 17513941
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || ||||| || || | ||||| |||
Sbjct 17513942 ATCCAGAAAGAGTCCACCCTCCATTTGGTG 17513971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429928365545835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |