Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 159 3e-34 seq5 138 1e-27 seq762 114 1e-20 seq6 114 1e-20 seq1 104 2e-17 seq3 102 8e-17 seq642 82.4 7e-11 >seq4 Length=14320061 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | |||||| ||||| || |||||||| ||| Sbjct 6306108 GCCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGC 6306167 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| |||||||| || ||| | || || ||||||||||||||||| Sbjct 6306168 GAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGG 6306227 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||||| | || | || |||| |||||||| Sbjct 6306228 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGAC 6306287 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 6306288 CTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335 >seq5 Length=16150104 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| | ||| | ||||||||||| ||||||||||| ||| Sbjct 6389282 GCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC 6389223 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || ||||| || || ||| | ||||| |||||||||||||| || Sbjct 6389222 GAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGG 6389163 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| ||| ||| |||| | || | || |||| ||| |||| Sbjct 6389162 AATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGAC 6389103 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || ||||| ||||| ||||| ||||||||| Sbjct 6389102 CTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 6389054 >seq762 Length=4953 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || || || | ||||||||| || || ||||||||||| Sbjct 4752 AGCCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAG 4811 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| | Sbjct 4812 CCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 4871 Query 131126 GGATTCCTTCTTTGTC 131141 |||||||||| ||||| Sbjct 4872 GGATTCCTTCCTTGTC 4887 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | |||||||||||| || |||||||||||| || || || |||| Sbjct 158 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC 217 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | |||||| || ||| |||| | | |||||| |||||||| || ||||| || || Sbjct 218 TCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 277 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || |||| | | | || | || || | | || | |||| ||| | ||| Sbjct 278 TGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGT 336 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| ||||| || ||||| |||||||| Sbjct 337 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 >seq6 Length=18523719 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || || || | ||||||||| || || ||||||||||| Sbjct 1442887 AGCCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAG 1442946 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| | Sbjct 1442947 CCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 1443006 Query 131126 GGATTCCTTCTTTGTC 131141 |||||||||| ||||| Sbjct 1443007 GGATTCCTTCCTTGTC 1443022 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| ||||| | ||| ||||| || || |||||||| || | ||||| Sbjct 17513977 ACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACC 17513918 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || ||||||||||| || ||| |||| | | ||||||||||||||| ||||| ||||| Sbjct 17513917 ATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTT 17513858 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 || ||| || ||| |||| | || | || || | | ||||| |||| || | Sbjct 17513857 ATCTTGGATCTT-TGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGA 17513799 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || |||| |||||| || || || ||||| Sbjct 17513798 TGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||||||||| || || || |||||||| | Sbjct 1437986 CCACCACGGAGACGGAGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCC 1438045 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| ||| Sbjct 1438046 AGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1438105 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| || || Sbjct 1438106 ATACCTTCCTTATC 1438119 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || | ||| | |||||||||||| || |||||||||||| || || || |||| Sbjct 1438294 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGGCCGTCC 1438353 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | |||||| || ||| |||| | | |||||| |||||||| || ||||| || || Sbjct 1438354 TCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATACCTTCCTTATCC 1438413 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || |||| | | | || | || || | | || | |||| ||| | ||| Sbjct 1438414 TGGATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGT 1438472 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| ||||| || ||||| |||||||| Sbjct 1438473 CTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | || | ||| || ||||| || || |||||||| | | Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATC-CGC 17514386 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | ||||| ||||| ||||| || || ||| |||| | | ||| ||||| || || Sbjct 17514385 AAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGG 17514326 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||| ||||| ||| | | ||| |||| | || | || || | | ||| | Sbjct 17514325 GATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAA 17514267 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| ||||| || ||||| || ||||||||||| Sbjct 17514266 CCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | || ||||||||||| ||||||||||| Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||| || || || |||| | | ||||||||| || ||| Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||||| | || | || || | ||| | Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACC 17514037 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || || || || ||||||||||| Sbjct 17514036 TCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||||||||||| || || ||||| ||| | Sbjct 17514672 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCC 17514613 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||| || || ||| |||| | | ||| |||||||||||| Sbjct 17514612 AAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGG 17514553 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 17514552 ATCCCTTCCTTGTC 17514539 >seq1 Length=19836964 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || || || | ||||||||||| || ||||||||||| Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | ||| || |||||||| || ||| | || | ||||||||| ||||| ||| Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||| | | || | || |||| ||||| | Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACC 7692042 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || ||||| ||||| || || || ||||| Sbjct 7692041 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995 >seq3 Length=15215380 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | || | || || |||||||| ||||||||||| Sbjct 11243711 CCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCA 11243652 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||| || || ||| |||| || | || |||||||| | | Sbjct 11243651 AGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCG 11243592 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || ||| | | || ||||| || | ||| | Sbjct 11243591 ATCCCTTCCTTGTC-TTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAAC 11243533 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| |||||| || || || ||||| || || || ||||| Sbjct 11243532 TTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 >seq642 Length=6837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 || ||| |||| || | |||||||||||| |||||||| || ||||| |||||| | Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| | || | || || | ||||| |||| ||| | || || |||||||| Sbjct 61 TTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAGG 120 Query 131215 GTTTTTACGAAAATCTGCAT 131234 ||||| ||||| |||||||| Sbjct 121 GTTTTGACGAAGATCTGCAT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004203466880