Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 168 8e-37 seq7 93.3 5e-14 >seq2 Length=13294645 Score = 168 bits (186), Expect = 8e-37 Identities = 406/601 (68%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 |||| || ||||||||||| |||| || ||||||| || || |||||||| || Sbjct 9186735 ATCAGGCACGCGAAATCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAG 9186676 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 || | ||||||||| || || |||||||| ||||| || || || ||| | | | || || Sbjct 9186675 GTTAATCCGGGCATGAGACCTCGCTTTTTCAGCCAGAAAATCGA-GCAGAAGCTACCGGA 9186617 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGCTGT 32832 ||||| || ||||| || || || || | | |||||| || || | | | | Sbjct 9186616 GAAGAAGATACCTTCGACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGTCTGAGAT-C 9186558 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 ||| |||||||| ||||| | ||| ||||| || ||||| || || || || | Sbjct 9186557 CATCGATCCACTTCATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCG 9186498 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | ||||||| || | | || || | || || | || || || | | ||||| | Sbjct 9186497 CGCGGAAGAGATGGTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGT 9186438 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCG 33011 |||| || || || ||||| ||||| || || || || |||||| ||||| | ||||| Sbjct 9186437 ACATCTCGGAGTGTATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCC 9186379 Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | || || || | ||| |||||| || | ||| || || |||||||| Sbjct 9186378 GAGACTTGCACATC-GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGA 9186320 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTAT 33129 ||| || || || || | ||| ||||| || || | | |||| | | || |||| || | Sbjct 9186319 GGCGGCGAAGAAGGCGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGT-TTAGATTCT 9186261 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| || |||| || | ||| |||||||| | ||||| || ||||| || | Sbjct 9186260 CCCAGTCGCGACCGTCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGG 9186201 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 33249 |||| || ||||| | |||||| | | ||||| || || || ||| ||||| | || Sbjct 9186200 CCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATCGGGAACATACAGAATCTGTCTG 9186141 Query 33250 G 33250 | Sbjct 9186140 G 9186140 >seq7 Length=17055980 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||||| ||| || | || ||||| || ||||| |||||| | ||| | || || Sbjct 15540522 GTTCCCGAATTGAAGAGAGTGGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATGA 15540463 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || || || |||||| | ||| ||||| || || | || | ||| | Sbjct 15540462 TAAGTTTGGATTGCGGAATCAATATCCTCCTTG-TGAATGCCAACAGAAACCCTCATCAG 15540404 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||||| |||||||| | ||| | || | ||| || | ||| ||||| || | Sbjct 15540403 CATGTGCTGAGGCCTTTCAACCA-CTTTTCCTTGGAGTTTTAAGAGGTATGATTTCTCAA 15540345 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| || | ||| ||| || || || || || || Sbjct 15540344 GAGTTTTGAATCCAAAGTAATCATATTCAAAATCACGATCATAGATGAT 15540296 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | ||| | || | | |||||||| |||||| Sbjct 15540846 TCCTCCTTGATCAACATAGCGAGCAGTATCATTGAATACCCGTAGCATTGGAACAATACC 15540787 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| |||| ||||| || || || || |||||| | || || || || || ||| Sbjct 15540786 ATTAGATGCTCCATTTGTGCCACGAATGTAACTTCCAGTTGCGCGGATGTTGTGAACTGA 15540727 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | |||||||||||| || ||| || | || || ||| | ||| ||||| || Sbjct 15540726 AACACCTATTCCCCCAGCTGACTTACTTATAACAGCACACTCTTTCAGCGTGTCATATAT 15540667 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || || || ||||||||| ||||| | ||||| ||||| Sbjct 15540666 TCCTTCAATGCTATCATCCTTCATGCAGATGAGAAAGCAGCT 15540625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620459977200