Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq3 98.7 9e-16 >seq6 Length=18523719 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||||||||| || || | || || | || || ||| || Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| || || | ||| ||||| |||||||| || || ||||| Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCGGACCA 17514564 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || || || || ||||| | || |||| ||| ||| ||| ||| ||||| Sbjct 17514565 ACAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAA 17514624 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || || || Sbjct 17514625 TATCCAGAAGGAGTCGACTCTTCACTTGGTTCT 17514657 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| |||| || | || || ||| || Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | || | ||| |||| | ||| ||||| |||||||| ||||| |||| Sbjct 17514278 GACACAATCGA-TAACGTCAAGGCAAAGATTCAG-GACAAGGAAGGGATCCCACCAGACC 17514335 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || || || || ||||| | || |||| |||||| | | ||||||| Sbjct 17514336 AACAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACA 17514395 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 |||| || || ||||| || || || Sbjct 17514396 ATATCCAGAAGGAATCAACCCTTCA 17514420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAA 25085 ||||| |||||||| | || |||||| || ||||| || || ||||| || Sbjct 1438185 GGTAAGACCATCACACTGGAGGTGGAGAGCTCGGACACCATTGACAACGTGAAGGCCAAG 1438126 Query 25086 ATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAA 25145 ||| || || ||||| || ||||| ||||| ||||| | || || || || || || Sbjct 1438125 ATCCAAGATAAGGAAGGTATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAG 1438066 Query 25146 TTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTA 25205 | || |||| |||||| ||| ||||||||||| || ||||| || || || ||||| Sbjct 1438065 CTCGAGGATGGTCGCACACTGGCTGATTACAATATCCAGAAAGAGTCGACCCTTCATTTG 1438006 Query 25206 GTGCT 25210 || || Sbjct 1438005 GTCCT 1438001 >seq3 Length=15215380 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/205 (72%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| ||||| ||||||| | || || || ||| Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | || || |||| || || | ||| || |||||||| || | ||| ||||| Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCA-AGATAAAGAAGGCATCCAACCGGACCA 11243831 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGC-ACTGTGGGCGATTACA 25176 ||| || | || |||||||| || || | ||||||| |||| ||| | | ||||| | Sbjct 11243832 GCAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATA 11243891 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | ||||| ||||| || || || || Sbjct 11243892 ACATTCAGAAAGAGTCTACTCTTCA 11243916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || || ||| |||| || ||||||| ||| || Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| | || | ||| |||| | ||| ||||| |||||||| | || ||||| Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCA-AGACAAGGAAGGGATCGCGCCGGACCA 11243603 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 | || | | || || || || ||||| | || |||| |||||| | | |||||||| Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || Sbjct 11243664 CATCCAAAAGGAATCAACACTTCA 11243687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433320305313455