Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 3e-21
seq3 98.7 9e-16
>seq6
Length=18523719
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||||||||| || || | || || | || || ||| ||
Sbjct 17514446 ATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATTACCTTGGAGGTTGAGAGCTCA 17514505
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| |||| || || | ||| ||||| |||||||| || || |||||
Sbjct 17514506 GACACAATCGACAACGTGAAGGCTAAGATTCA-GGACAAGGAAGGGATCCCTCCGGACCA 17514564
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| || | || || || || ||||| | || |||| ||| ||| ||| ||| |||||
Sbjct 17514565 ACAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGGACTTTGGCCGACTACAA 17514624
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || || || || || || || ||
Sbjct 17514625 TATCCAGAAGGAGTCGACTCTTCACTTGGTTCT 17514657
Score = 104 bits (114), Expect = 2e-17
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| ||| |||| || | || || ||| ||
Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277
Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| | || | ||| |||| | ||| ||||| |||||||| ||||| ||||
Sbjct 17514278 GACACAATCGA-TAACGTCAAGGCAAAGATTCAG-GACAAGGAAGGGATCCCACCAGACC 17514335
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||| | | || || || || ||||| | || |||| |||||| | | |||||||
Sbjct 17514336 AACAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACA 17514395
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
|||| || || ||||| || || ||
Sbjct 17514396 ATATCCAGAAGGAATCAACCCTTCA 17514420
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAA 25085
||||| |||||||| | || |||||| || ||||| || || ||||| ||
Sbjct 1438185 GGTAAGACCATCACACTGGAGGTGGAGAGCTCGGACACCATTGACAACGTGAAGGCCAAG 1438126
Query 25086 ATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAA 25145
||| || || ||||| || ||||| ||||| ||||| | || || || || || ||
Sbjct 1438125 ATCCAAGATAAGGAAGGTATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAG 1438066
Query 25146 TTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTA 25205
| || |||| |||||| ||| ||||||||||| || ||||| || || || |||||
Sbjct 1438065 CTCGAGGATGGTCGCACACTGGCTGATTACAATATCCAGAAAGAGTCGACCCTTCATTTG 1438006
Query 25206 GTGCT 25210
|| ||
Sbjct 1438005 GTCCT 1438001
>seq3
Length=15215380
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/205 (72%), Gaps = 3/205 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| ||||| ||||||| | || || || |||
Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| | || || |||| || || | ||| || |||||||| || | ||| |||||
Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCA-AGATAAAGAAGGCATCCAACCGGACCA 11243831
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGC-ACTGTGGGCGATTACA 25176
||| || | || |||||||| || || | ||||||| |||| ||| | | ||||| |
Sbjct 11243832 GCAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATA 11243891
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| ||||| ||||| || || || ||
Sbjct 11243892 ACATTCAGAAAGAGTCTACTCTTCA 11243916
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || || | || || ||| |||| || ||||||| ||| ||
Sbjct 11243485 ATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCA 11243544
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| | || | ||| |||| | ||| ||||| |||||||| | || |||||
Sbjct 11243545 GACACTGTTGATAATGTAAAGACAAAGATTCA-AGACAAGGAAGGGATCGCGCCGGACCA 11243603
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
| || | | || || || || ||||| | || |||| |||||| | | ||||||||
Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| ||||| || || ||
Sbjct 11243664 CATCCAAAAGGAATCAACACTTCA 11243687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433320305313455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |