Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq6 93.3 5e-14 seq7 89.7 6e-13 seq552 86.0 7e-12 seq1 86.0 7e-12 seq5 84.2 2e-11 seq234 82.4 9e-11 >seq2 Length=13294645 Score = 215 bits (238), Expect = 6e-51 Identities = 509/752 (68%), Gaps = 15/752 (2%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || ||||||||| ||||| |||| ||||| |||| | ||| Sbjct 9186897 CTATCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACCA-ACGC 9186839 Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || |||||| || || || ||||||| | ||||| || | |||| Sbjct 9186838 GCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATTGA 9186779 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCAAAG 93100 | || | || | || | || || | ||| | |||| || | |||||| || Sbjct 9186778 CTTCACGCG-CTCCTCGGAGAGCTTCGTCC-ACAAGAGCGTGTAGATCAGGCACGCGAAA 9186721 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||| |||||| |||||||||||||| |||||||| ||| ||| ||||| || || | Sbjct 9186720 TCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATG 9186661 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTC 93219 || ||||| || || ||||| || || | |||| || ||||| || || || |||||||| Sbjct 9186660 AGACCTCGCTTTTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGATACCTTC 9186602 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 || || || || || || | ||||||||| | | || | | | |||||| || Sbjct 9186601 GACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGT--CTGAGATCCATC-GATCCACTT 9186545 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| | |||||| || | ||||| | |||||||| ||| || || | Sbjct 9186544 CATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAGAGATG 9186485 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 |||| ||| | || ||||| || |||| | ||| ||||| || || || Sbjct 9186484 GTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAGTG 9186425 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 | ||||| || || || ||||| ||||||||| | || |||| || ||||| || Sbjct 9186424 TATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGCACATC 9186365 Query 93460 TTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 || | ||||| ||||||| || || || || || || || || || || | Sbjct 9186364 -GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGG 9186306 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG-GATAGA 93577 | | || || || || || ||| || | || || || || ||||| ||| || | Sbjct 9186305 CGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTCGCGACCG- 9186247 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 |||| |||||||||||||||||| | ||||| || |||||||| || || |||||||| Sbjct 9186246 TCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTTGTACATC 9186187 Query 93638 TCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||| || | | | ||||| || || || || Sbjct 9186186 TCCCAGATCTGTGGGTATTGGATCGGGAACAT 9186155 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/97 (82%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 7016976 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7017033 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| ||||||||| Sbjct 7017034 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTATT 7017068 >seq6 Length=18523719 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 2677496 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 2677553 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||| |||||||| ||||||| |||| Sbjct 2677554 GCGTGGGTTCAAACCCCACTTCTGACAACTTAT 2677586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 7868234 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7868177 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||||| || ||||| |||||| || || || | |||| Sbjct 7868176 GCGTGGGTTCAAATCCCACTTCTGACATTTTCTTTTTTTATTTTT 7868132 >seq7 Length=17055980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/109 (79%), Gaps = 6/109 (6%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 11692156 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 11692099 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 |||||||||| || ||||| |||||| || || || || ||||| Sbjct 11692098 GGGCGTGGGTTCAAATCCCACTTCTGACATTTTTTTTTTTTAAATTTTG 11692050 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 150938 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 150881 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| ||||| | ||||| || Sbjct 150880 GCGTGGGTTCAAACCCCACTTCTGAC-ATTTATTTTT 150845 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGG 126319 || ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 11691299 TATAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAG 11691240 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 11691239 GGCGTGGGTTCAAATCCCACTTCTGACAA 11691211 >seq552 Length=9732 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 6660 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6603 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| | |||| ||||| ||||| Sbjct 6602 TTCAAATCCCACAGCTGTC-AATTTTTATTTTTATTTT 6566 >seq1 Length=19836964 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3596070 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3596127 Query 126325 GGGTTCGAACCCCACACCTGACAAAT 126350 |||||| || |||||| ||| ||||| Sbjct 3596128 GGGTTCAAATCCCACAGCTGTCAAAT 3596153 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 16611975 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16611918 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| | |||| ||||| ||||| Sbjct 16611917 TTCAAATCCCACAGCTGTC-AATTTTTATTTTTATTTT 16611881 >seq5 Length=16150104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3138026 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3138083 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| || || || | |||| Sbjct 3138084 TTCAAATCCCACAGCTGTCAATTTCTTTTTATATTTTT 3138121 >seq234 Length=29711 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | | Sbjct 4256 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 4199 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| ||||| | ||||| || Sbjct 4198 GCGTGGGTTCAAACCCCACTTCTGAC-ATTTATTTTT 4163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556850658172680