Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2 215 6e-51
seq6 93.3 5e-14
seq7 89.7 6e-13
seq552 86.0 7e-12
seq1 86.0 7e-12
seq5 84.2 2e-11
seq234 82.4 9e-11
>seq2
Length=13294645
Score = 215 bits (238), Expect = 6e-51
Identities = 509/752 (68%), Gaps = 15/752 (2%)
Strand=Plus/Minus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
||||| || ||||| || ||||||||| ||||| |||| ||||| |||| | |||
Sbjct 9186897 CTATCTGCCACAAACTCAATGTACTGACTCATCAGGTCACTGTTCATCCCTACCA-ACGC 9186839
Query 92984 ACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
|| || || |||||| || || || ||||||| | ||||| || | ||||
Sbjct 9186838 GCACGGCAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGATTGA 9186779
Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCAAAG 93100
| || | || | || | || || | ||| | |||| || | |||||| ||
Sbjct 9186778 CTTCACGCG-CTCCTCGGAGAGCTTCGTCC-ACAAGAGCGTGTAGATCAGGCACGCGAAA 9186721
Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160
||| |||||| |||||||||||||| |||||||| ||| ||| ||||| || || |
Sbjct 9186720 TCGCAATGTAAGCCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATG 9186661
Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTC 93219
|| ||||| || || ||||| || || | |||| || ||||| || || || ||||||||
Sbjct 9186660 AGACCTCGCTTTTTCAGCCAGAAAATCG-AGCAGAAGCTACCGGAGAAGAAGATACCTTC 9186602
Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279
|| || || || || || | ||||||||| | | || | | | |||||| ||
Sbjct 9186601 GACACAGGCGAAAGCGACGATTCTCTCGGCAAAAGT--CTGAGATCCATC-GATCCACTT 9186545
Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339
| ||||| | |||||| || | ||||| | |||||||| ||| || || |
Sbjct 9186544 CATCGCCCACTGGGCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGCGCGGAAGAGATG 9186485
Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
|||| ||| | || ||||| || |||| | ||| ||||| || || ||
Sbjct 9186484 GTCTCTCTCTTTGTTGTCCTTGATGTAAGTGTCGAGGAGGAGACTGTACATCTCGGAGTG 9186425
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
| ||||| || || || ||||| ||||||||| | || |||| || ||||| ||
Sbjct 9186424 TATGTTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGCACATC 9186365
Query 93460 TTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518
|| | ||||| ||||||| || || || || || || || || || || |
Sbjct 9186364 -GGACATAAATCGGGAAGCGAGATTCTCCAGAACGATTCCGTCTGAGGCGGCGAAGAAGG 9186306
Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG-GATAGA 93577
| | || || || || || ||| || | || || || || ||||| ||| || |
Sbjct 9186305 CGAGTACGTGTTTGATGAAGTGTCGTTCGCCGTCGTTTAGATTCTCCCAGTCGCGACCG- 9186247
Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637
|||| |||||||||||||||||| | ||||| || |||||||| || || ||||||||
Sbjct 9186246 TCTTGCGAAAGATCGACTTCTTCGGCCGTCCAGAAAGATGCTTCGGCCTTCTTGTACATC 9186187
Query 93638 TCCCATATGTCTTGATATTGAATTGGAAATAT 93669
||||| || | | | ||||| || || || ||
Sbjct 9186186 TCCCAGATCTGTGGGTATTGGATCGGGAACAT 9186155
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/97 (82%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 7016976 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7017033
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| || ||||| ||||| |||||||||
Sbjct 7017034 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTATT 7017068
>seq6
Length=18523719
Score = 93.3 bits (102), Expect = 5e-14
Identities = 77/93 (83%), Gaps = 6/93 (6%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 2677496 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 2677553
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353
|||||||||| |||||||| ||||||| ||||
Sbjct 2677554 GCGTGGGTTCAAACCCCACTTCTGACAACTTAT 2677586
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/105 (79%), Gaps = 6/105 (6%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 7868234 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7868177
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
|||||||||| || ||||| |||||| || || || | ||||
Sbjct 7868176 GCGTGGGTTCAAATCCCACTTCTGACATTTTCTTTTTTTATTTTT 7868132
>seq7
Length=17055980
Score = 89.7 bits (98), Expect = 6e-13
Identities = 86/109 (79%), Gaps = 6/109 (6%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320
||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 11692156 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 11692099
Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367
|||||||||| || ||||| |||||| || || || || |||||
Sbjct 11692098 GGGCGTGGGTTCAAATCCCACTTCTGACATTTTTTTTTTTTAAATTTTG 11692050
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/97 (80%), Gaps = 7/97 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | |
Sbjct 150938 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 150881
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| |||||||| ||||| | ||||| ||
Sbjct 150880 GCGTGGGTTCAAACCCCACTTCTGAC-ATTTATTTTT 150845
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/89 (81%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGG 126319
|| ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct 11691299 TATAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAG 11691240
Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||| || ||||| |||||||
Sbjct 11691239 GGCGTGGGTTCAAATCCCACTTCTGACAA 11691211
>seq552
Length=9732
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/98 (81%), Gaps = 3/98 (3%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 6660 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6603
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
||| || |||||| ||| | |||| ||||| |||||
Sbjct 6602 TTCAAATCCCACAGCTGTC-AATTTTTATTTTTATTTT 6566
>seq1
Length=19836964
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/86 (83%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 3596070 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3596127
Query 126325 GGGTTCGAACCCCACACCTGACAAAT 126350
|||||| || |||||| ||| |||||
Sbjct 3596128 GGGTTCAAATCCCACAGCTGTCAAAT 3596153
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/98 (81%), Gaps = 3/98 (3%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 16611975 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 16611918
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
||| || |||||| ||| | |||| ||||| |||||
Sbjct 16611917 TTCAAATCCCACAGCTGTC-AATTTTTATTTTTATTTT 16611881
>seq5
Length=16150104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 3138026 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3138083
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
||| || |||||| ||| ||| || || || | ||||
Sbjct 3138084 TTCAAATCCCACAGCTGTCAATTTCTTTTTATATTTTT 3138121
>seq234
Length=29711
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/97 (80%), Gaps = 7/97 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||| ||||||||||| | ||| |||||| |||| | |
Sbjct 4256 AGTCAGGATGGCCGAGTGGTCCAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 4199
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| |||||||| ||||| | ||||| ||
Sbjct 4198 GCGTGGGTTCAAACCCCACTTCTGAC-ATTTATTTTT 4163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556850658172680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |