Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 8e-29
seq642 131 1e-25
seq5 114 1e-20
seq762 113 4e-20
seq3 111 1e-19
seq1 87.8 2e-12
seq2 82.4 6e-11
>seq6
Length=18523719
Score = 141 bits (156), Expect = 8e-29
Identities = 158/211 (75%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
|||||||||| ||||| ||||||||||| || || || ||||||| || || || | |
Sbjct 17513760 AGATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCT 17513819
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| || ||||| ||| || ||||| || ||||| ||||| || || |
Sbjct 17513820 CTGACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACC 17513879
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | ||||| || ||||| || ||| |||| ||| ||||| || | || ||||
Sbjct 17513880 AGCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACA 17513939
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427
|||| || ||||| |||||| | ||||| ||
Sbjct 17513940 ACATCCAGAAAGAGTCCACCCTCCATTTGGT 17513970
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || ||||| ||| | ||||| || || |||| || || || |||| |
Sbjct 1443409 AGATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCT 1443350
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| | | ||| || || || ||||||||||||||||| || ||||
Sbjct 1443349 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 1443290
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| ||| | ||||| || ||||| || ||||| || || ||| || | |||||||||
Sbjct 1443289 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 1443230
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||| || || ||||||||| | || || ||| | || | || || |||
Sbjct 1443229 ACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGT 1443180
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || || || ||| | ||||| || || |||| || || ||||||| |
Sbjct 1438507 AGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCT 1438448
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| | | ||| || || || || ||||| |||||||| || ||||
Sbjct 1438447 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 1438388
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | ||||| || ||||| || ||||| ||||| ||| || | |||||||||
Sbjct 1438387 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 1438328
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTT 22428
|||| || || || || ||| | ||| | |||
Sbjct 1438327 ACATCCAGAAGGAGTCGACCCTTCATCTCGTT 1438296
Score = 91.5 bits (100), Expect = 1e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 22245 CGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAA 22304
||| || || |||| || || ||||| | | |||| ||| | ||| | | || ||
Sbjct 1443089 CGGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAA 1443030
Query 22305 AATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACA 22364
|||||||||||||| || || ||||| || || || ||||| || || || || || ||
Sbjct 1443029 GATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCA 1442970
Query 22365 GTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTT 22424
| | |||||| ||||| | | ||||||||||| || ||||| || ||| | || ||
Sbjct 1442969 GCTTGAGGATGGTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTT 1442910
Query 22425 AGT 22427
||
Sbjct 1442909 GGT 1442907
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| || || | || || ||||| ||||| | || || || | |
Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | |||| || ||||| |||||||| || || ||||| || ||
Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||| || |||||| | || || |||||| || | |||||||||
Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||| || || ||
Sbjct 17514170 ATCCAAAAGGAGTCTAC 17514186
>seq642
Length=6837
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || ||||| ||| | ||||| || || |||| || || || |||| |
Sbjct 370 AGATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCT 311
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| | | ||| || || || ||||||||||||||||| || ||||
Sbjct 310 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 251
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| ||| | ||||| || ||||| || ||||| || || ||| || | |||||||||
Sbjct 250 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 191
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||| || || ||||||||| | || || ||| | || | || || |||
Sbjct 190 ACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGT 141
>seq5
Length=16150104
Score = 114 bits (126), Expect = 1e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| ||||| || || || ||||| |||| || || || | || ||||| || ||| |
Sbjct 6389051 AAACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATC 6389110
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| |||| ||| | ||| || ||||| || || || ||||||||||| |||||||| ||
Sbjct 6389111 CTCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGA 6389170
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
|| || || | || || ||||| |||||| | || || ||| || || |||| ||
Sbjct 6389171 CCAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTA 6389230
Query 22395 CAACATTCAAAAAGAATCCAC 22415
||||||||| || || || ||
Sbjct 6389231 CAACATTCAGAAGGAGTCGAC 6389251
>seq762
Length=4953
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || || || || ||| | ||||| || || |||| || || ||||||| |
Sbjct 371 AGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCT 312
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
| || ||| | ||| | | ||| || || || || ||||| |||||||| || ||||
Sbjct 311 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 252
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | ||||| || ||||| || ||||| ||||| ||| || | |||||||||
Sbjct 251 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 192
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTT 22428
|||| || || || || ||| | ||| | |||
Sbjct 191 ACATCCAGAAGGAGTCGACCCTTCATCTCGTT 160
Score = 89.7 bits (98), Expect = 4e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315
|||| || || ||||| | | |||| ||| | ||| | | || || ||||||||||
Sbjct 4943 TCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAGATTCAAGACA 4884
Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375
|||| || || ||||| || || || ||||| || || || || || ||| | ||||||
Sbjct 4883 AGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATG 4824
Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427
||||| | | ||||||||||| || ||||| || ||| | || || ||
Sbjct 4823 GTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTTGGT 4772
>seq3
Length=15215380
Score = 111 bits (122), Expect = 1e-19
Identities = 155/216 (72%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
||||||| | |||||||| ||| | || || || || | |||||||| || |||| |
Sbjct 11192759 GATGCAA-TCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTC 11192701
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| ||| | ||| | ||||| || || ||||||||||| || || | || || ||
Sbjct 11192700 AGACACCATTGACAACATCAAGACCAAGATCCAAGACAAGGAAGGAATCCTTCCGGAACA 11192641
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
|| | ||||| |||||||| |||||| | |||||| || || | | ||||||||
Sbjct 11192640 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTGCGGATTACAA 11192581
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
||| ||||| ||||| || | ||| | || |||||
Sbjct 11192580 CATCCAAAAGGAATCAACACTTCATCTTGTGTTGCG 11192545
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
||||||||| ||||| ||||| | || || ||||| | || || ||||| || | |
Sbjct 11243484 GATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTC 11243543
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
|| || || || || | || ||| |||||||||||||| || || | || || ||
Sbjct 11243544 AGACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCA 11243603
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
| | | | || || || || |||||| | |||||| |||||| | | ||||||||
Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663
Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
||| ||||| ||||| || | || | || |||||
Sbjct 11243664 CATCCAAAAGGAATCAACACTTCACCTTGTGTTGCG 11243699
>seq1
Length=19836964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||| |||||||| ||||| ||||| |||| || || ||| | || || || || || |
Sbjct 7691991 AAAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTC 7692050
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
|||| || | ||| || | || || || ||||||||||| || || || || ||
Sbjct 7692051 GTCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGA 7692110
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394
||| || ||||| || || ||||| || ||| | || || | || || | |||||
Sbjct 7692111 TCAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTA 7692170
Query 22395 CAACATTCAAAAAGAATCCAC 22415
|||||| || || || || ||
Sbjct 7692171 CAACATCCAGAAGGAGTCGAC 7692191
>seq2
Length=13294645
Score = 82.4 bits (90), Expect = 6e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 117067 TCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAG-TTTTGCTGCCATATTTTTT 117125
||||||||||| ||||||||| || ||||| || || || || |||| | || || |
Sbjct 9186585 TCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CGATTTTCTGG 9186643
Query 117126 ATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGAC 117185
| || | |||||| ||||| || |||| || |||||| || || || || |||
Sbjct 9186644 CTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAGTTGATCTCACGAGAC 9186703
Query 117186 GAAGGTTTACACACCGATTTTGCGTGCATGTACTACA 117222
||||| ||||| |||||| |||||| || |||||
Sbjct 9186704 GAAGGCTTACATTGCGATTTCGCGTGCCTGATCTACA 9186740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419720546811205
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