Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 141 8e-29 seq642 131 1e-25 seq5 114 1e-20 seq762 113 4e-20 seq3 111 1e-19 seq1 87.8 2e-12 seq2 82.4 6e-11 >seq6 Length=18523719 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| ||||||||||| || || || ||||||| || || || | | Sbjct 17513760 AGATGCAAATCTTTGTGAAAACTTTAACAGGCAAGACCATCACTCTCGAGGTCGAGAGCT 17513819 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || ||||| ||| || ||||| || ||||| ||||| || || | Sbjct 17513820 CTGACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAAGAGGGAATTCCTCCGGACC 17513879 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||||| || ||||| || ||| |||| ||| ||||| || | || |||| Sbjct 17513880 AGCAGAGGCTTATCTTCGCCGGTAAGCAGCTAGAAGATGGTCGCACACTCGCTGACTACA 17513939 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| || ||||| |||||| | ||||| || Sbjct 17513940 ACATCCAGAAAGAGTCCACCCTCCATTTGGT 17513970 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || ||||| ||| | ||||| || || |||| || || || |||| | Sbjct 1443409 AGATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCT 1443350 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | ||| || || || ||||||||||||||||| || |||| Sbjct 1443349 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 1443290 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | ||||| || ||||| || ||||| || || ||| || | ||||||||| Sbjct 1443289 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 1443230 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || || ||||||||| | || || ||| | || | || || ||| Sbjct 1443229 ACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGT 1443180 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || ||| | ||||| || || |||| || || ||||||| | Sbjct 1438507 AGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCT 1438448 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | ||| || || || || ||||| |||||||| || |||| Sbjct 1438447 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 1438388 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||||| || ||||| || ||||| ||||| ||| || | ||||||||| Sbjct 1438387 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 1438328 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||| || || || || ||| | ||| | ||| Sbjct 1438327 ACATCCAGAAGGAGTCGACCCTTCATCTCGTT 1438296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 22245 CGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAA 22304 ||| || || |||| || || ||||| | | |||| ||| | ||| | | || || Sbjct 1443089 CGGCAAGACCATCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAA 1443030 Query 22305 AATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACA 22364 |||||||||||||| || || ||||| || || || ||||| || || || || || || Sbjct 1443029 GATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCA 1442970 Query 22365 GTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTT 22424 | | |||||| ||||| | | ||||||||||| || ||||| || ||| | || || Sbjct 1442969 GCTTGAGGATGGTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTT 1442910 Query 22425 AGT 22427 || Sbjct 1442909 GGT 1442907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || ||||| ||||| | || || || | | Sbjct 17513990 ATGCAGATTTTTGTCAAGACCCTCACGGGCAAAACCATCACTTTGGAGGTTGAGAGTTCA 17514049 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||| |||||||| || || ||||| || || Sbjct 17514050 GACACAATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 17514109 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | || || |||||| || | ||||||||| Sbjct 17514110 CAGAGACTCATCTTTGCGGGGAAACAGCTTGAAGACGGACGCACCCTCGCGGATTACAAC 17514169 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 17514170 ATCCAAAAGGAGTCTAC 17514186 >seq642 Length=6837 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || ||||| ||| | ||||| || || |||| || || || |||| | Sbjct 370 AGATGCAGATCTTCGTTAAGACTCTCACCGGGAAGACTATCACCCTCGAGGTTGAAAGCT 311 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | ||| || || || ||||||||||||||||| || |||| Sbjct 310 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATC 251 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | ||||| || ||||| || ||||| || || ||| || | ||||||||| Sbjct 250 AGCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTTTGGCCGATTACA 191 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || || ||||||||| | || || ||| | || | || || ||| Sbjct 190 ACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGACTCCGTGGTGGT 141 >seq5 Length=16150104 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| |||| || || || | || ||||| || ||| | Sbjct 6389051 AAACATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTTGAGGTCGAATC 6389110 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||| ||| | ||| || ||||| || || || ||||||||||| |||||||| || Sbjct 6389111 CTCCGACACCATCGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGA 6389170 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | || || ||||| |||||| | || || ||| || || |||| || Sbjct 6389171 CCAGCAGCGATTAATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACGCTCGCCGACTA 6389230 Query 22395 CAACATTCAAAAAGAATCCAC 22415 ||||||||| || || || || Sbjct 6389231 CAACATTCAGAAGGAGTCGAC 6389251 >seq762 Length=4953 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || ||| | ||||| || || |||| || || ||||||| | Sbjct 371 AGATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCT 312 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | ||| || || || || ||||| |||||||| || |||| Sbjct 311 CTGACACCATCGACAACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATTCCTCCGGATC 252 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||||| || ||||| || ||||| ||||| ||| || | ||||||||| Sbjct 251 AGCAGAGACTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGAACTTTGGCCGATTACA 192 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||| || || || || ||| | ||| | ||| Sbjct 191 ACATCCAGAAGGAGTCGACCCTTCATCTCGTT 160 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || ||||| | | |||| ||| | ||| | | || || |||||||||| Sbjct 4943 TCACACTGGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAGATTCAAGACA 4884 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 |||| || || ||||| || || || ||||| || || || || || ||| | |||||| Sbjct 4883 AGGAAGGAATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATG 4824 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| | | ||||||||||| || ||||| || ||| | || || || Sbjct 4823 GTCGCACACTGGCTGATTACAACATCCAGAAAGAGTCGACCCTTCACTTGGT 4772 >seq3 Length=15215380 Score = 111 bits (122), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||| | |||||||| ||| | || || || || | |||||||| || |||| | Sbjct 11192759 GATGCAA-TCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTC 11192701 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| | ||||| || || ||||||||||| || || | || || || Sbjct 11192700 AGACACCATTGACAACATCAAGACCAAGATCCAAGACAAGGAAGGAATCCTTCCGGAACA 11192641 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | ||||| |||||||| |||||| | |||||| || || | | |||||||| Sbjct 11192640 GCAGAGGCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTGCGGATTACAA 11192581 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| ||||| ||||| || | ||| | || ||||| Sbjct 11192580 CATCCAAAAGGAATCAACACTTCATCTTGTGTTGCG 11192545 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| ||||| | || || ||||| | || || ||||| || | | Sbjct 11243484 GATGCAAATATTTGTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTC 11243543 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || || || || | || ||| |||||||||||||| || || | || || || Sbjct 11243544 AGACACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCA 11243603 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 | | | | || || || || |||||| | |||||| |||||| | | |||||||| Sbjct 11243604 ATAGAGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAA 11243663 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| ||||| ||||| || | || | || ||||| Sbjct 11243664 CATCCAAAAGGAATCAACACTTCACCTTGTGTTGCG 11243699 >seq1 Length=19836964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| ||||| ||||| |||| || || ||| | || || || || || | Sbjct 7691991 AAAAATGCAAATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTC 7692050 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| || | ||| || | || || || ||||||||||| || || || || || Sbjct 7692051 GTCCGACACGATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGGATCCCGCCGGA 7692110 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || ||||| || ||| | || || | || || | ||||| Sbjct 7692111 TCAGCAGCGTCTGATTTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACACTCGCGGATTA 7692170 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || || || || Sbjct 7692171 CAACATCCAGAAGGAGTCGAC 7692191 >seq2 Length=13294645 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 117067 TCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAG-TTTTGCTGCCATATTTTTT 117125 ||||||||||| ||||||||| || ||||| || || || || |||| | || || | Sbjct 9186585 TCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTCTGCT-CGATTTTCTGG 9186643 Query 117126 ATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGAC 117185 | || | |||||| ||||| || |||| || |||||| || || || || ||| Sbjct 9186644 CTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAGTTGATCTCACGAGAC 9186703 Query 117186 GAAGGTTTACACACCGATTTTGCGTGCATGTACTACA 117222 ||||| ||||| |||||| |||||| || ||||| Sbjct 9186704 GAAGGCTTACATTGCGATTTCGCGTGCCTGATCTACA 9186740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720546811205