Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq1 95.1 2e-14 seq6 89.7 1e-12 seq34 87.8 4e-12 seq25 87.8 4e-12 seq5 87.8 4e-12 seq4 87.8 4e-12 seq3 87.8 4e-12 seq2 87.8 4e-12 seq401 84.2 4e-11 >seq7 Length=17055980 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| ||||| ||||| || |||| | ||||| || ||| | Sbjct 12846355 TCAATTCCCTCTATGGTTGATGGACTCAAACCCGGGCAGAGAAAGATACTTTTTTGTTCG 12846414 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||||| | | | || ||||| || || || |||||||||||||| ||| Sbjct 12846415 TTTAAGAGGAACTTCATCAAGGAGGCCAAGGTTGCCCAATTCTCTGGTTATGTATCAGAA 12846474 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 || | || |||||||||||||||||||| || | || | || ||||| ||| Sbjct 12846475 CACTCGGCTTATCATCACGGTGAGCAGAGTCTTGCCAGTACGATCATTGGTATGGCGCAG 12846534 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 || ||||| ||||| |||||||| ||| |||| | || || ||||| ||||| Sbjct 12846535 GATTATGTTGGCAGCAACAACATAAACCTGCTTCAACCAAATGGTCAATTTGG 12846587 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 11620189 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 11620130 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 11620129 AGCCCCAC 11620122 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7716093 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7716152 Query 142563 CCCCAC 142568 |||||| Sbjct 7716153 CCCCAC 7716158 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10515060 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10515001 Query 142563 CCCCAC 142568 |||||| Sbjct 10515000 CCCCAC 10514995 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10537764 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10537823 Query 142563 CCCCAC 142568 |||||| Sbjct 10537824 CCCCAC 10537829 >seq1 Length=19836964 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 |||||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 6489375 AGATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 6489434 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 6489435 CGAGCCCCAC 6489444 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 132926 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 132985 Query 142563 CCCCAC 142568 |||||| Sbjct 132986 CCCCAC 132991 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 576093 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 576152 Query 142563 CCCCAC 142568 |||||| Sbjct 576153 CCCCAC 576158 >seq6 Length=18523719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2233998 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2233939 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| |||| |||| Sbjct 2233938 CCCCACGGTGGGCGAAAGT 2233920 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14025289 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14025230 Query 142563 CCCCAC 142568 |||||| Sbjct 14025229 CCCCAC 14025224 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17715210 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17715269 Query 142563 CCCCAC 142568 |||||| Sbjct 17715270 CCCCAC 17715275 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 39279 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 39338 Query 142563 CCCCAC 142568 |||||| Sbjct 39339 CCCCAC 39344 >seq34 Length=94207 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 84553 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84494 Query 142563 CCCCAC 142568 |||||| Sbjct 84493 CCCCAC 84488 >seq25 Length=107011 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 65619 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 65678 Query 142563 CCCCAC 142568 |||||| Sbjct 65679 CCCCAC 65684 >seq5 Length=16150104 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5903529 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5903470 Query 142563 CCCCAC 142568 |||||| Sbjct 5903469 CCCCAC 5903464 >seq4 Length=14320061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6920148 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6920089 Query 142563 CCCCAC 142568 |||||| Sbjct 6920088 CCCCAC 6920083 >seq3 Length=15215380 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2183281 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2183340 Query 142563 CCCCAC 142568 |||||| Sbjct 2183341 CCCCAC 2183346 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5201761 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5201820 Query 142563 CCCCAC 142568 |||||| Sbjct 5201821 CCCCAC 5201826 >seq2 Length=13294645 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8439526 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8439467 Query 142563 CCCCAC 142568 |||||| Sbjct 8439466 CCCCAC 8439461 >seq401 Length=16829 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 1041 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 1100 Query 142563 CCCCAC 142568 |||||| Sbjct 1101 CCCCAC 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027817612535337