Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 4e-20
seq3 113 4e-20
seq642 109 5e-19
seq5 105 6e-18
seq762 100 2e-16
>seq6
Length=18523719
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | ||| || | || | || ||||| || || || ||||||||
Sbjct 17514447 ATACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCC 17514388
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| ||| || || ||||| |||||| ||||||| | ||||||||| ||
Sbjct 17514387 GCAAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGT 17514328
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||||| || | | || | ||||| | | ||
Sbjct 17514327 GGGATCCCTTCCTTGTCCTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCA 17514268
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | ||||| ||||| || ||||| ||||||||||||||
Sbjct 17514267 ACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | | ||| || || | || || || || || || ||||| ||| |
Sbjct 17514672 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCC 17514613
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| ||| ||| ||| ||||| ||||| |||||| ||||||| | |||||||||||||||
Sbjct 17514612 AAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGG 17514553
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| ||||| ||||| |||||| || | | || | ||||| | | || ||
Sbjct 17514552 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCAACC 17514493
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| ||| | || ||||| |||| ||| || ||||| || |||||
Sbjct 17514492 TCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| ||||| | ||| || || | || ||||| || || ||||||||||||
Sbjct 1443178 ATACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCG 1443237
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| ||||| | || || || ||| |||| || | || || ||||||
Sbjct 1443238 GCCAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGA 1443297
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| ||| | | || | |||||| | | |||
Sbjct 1443298 GGAATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCA 1443357
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || ||||| ||||| || || || ||||||||
Sbjct 1443358 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || || | ||| | ||| | || || || || || ||||||||||||
Sbjct 1438276 ATACCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 1438335
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || || || | || || || ||| |||| || | ||| || ||||||
Sbjct 1438336 GCCAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGA 1438395
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || ||||| ||| | | || | |||||| | | |||
Sbjct 1438396 GGAATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCC 1438455
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || |||||||| ||||| || || || ||||||||
Sbjct 1438456 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|||||||| | || | | || ||||| | || || ||||| || |||||||| ||
Sbjct 17513991 ATACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 17513932
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| |||||| || || ||||| ||| |||| || | ||| |||||||||
Sbjct 17513931 GCGAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || ||||| || |||||| ||| | | || | |||||| | | |||
Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCG 17513812
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || ||||| || | |||||| ||||| || |||||
Sbjct 17513811 ACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 96.9 bits (106), Expect = 3e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| || || ||| ||| ||||| || || |||
Sbjct 1442919 GTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGCTTTCCA 1442978
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| |||||||| || || ||||| ||||| |||||| ||
Sbjct 1442979 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTC 1443038
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356
| | |||| |||||||| | || || |||| || | || ||||||
Sbjct 1443039 ACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCCG 1443089
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | ||| | |||||| || ||||| |||||||||||
Sbjct 17514219 ATACCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCC 17514160
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || |||||||| ||||| || || ||||||| | ||| ||||| ||
Sbjct 17514159 GCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGT 17514100
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| |||||| || | | || | ||||| | ||
Sbjct 17514099 GGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCA 17514040
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | |||||||| || || || || ||||||||||||||
Sbjct 17514039 ACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | || ||||| | || || ||||| || || ||||||||
Sbjct 1437985 ACCACCACGGAGACGGAGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGC 1438044
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || ||| ||| || || || || |||||| ||||||||||||| |||||||| ||
Sbjct 1438045 CAGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 1438104
Query 114275 AATGCCTTCTTTGTC 114289
|| ||||| || ||
Sbjct 1438105 GATACCTTCCTTATC 1438119
>seq3
Length=15215380
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || | || | || ||||| ||||| |||||||||||
Sbjct 11243714 ATCCCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCT 11243655
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| ||| || || |||||||||||| |||||| | || |||||||||
Sbjct 11243654 GCAAGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGC 11243595
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
| || ||||| ||||| ||||||| |||| | ||||| ||||| | ||
Sbjct 11243594 GCGATCCCTTCCTTGTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCA 11243535
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | |||||||| || || ||||| ||||| || |||||
Sbjct 11243534 ACTTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 98.7 bits (108), Expect = 8e-16
Identities = 163/232 (70%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || | ||| | || ||||| ||||| |||||||||||
Sbjct 11192530 ATCCCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCC 11192589
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||| | ||| ||||| |||||||| || |||| || | ||| || ||||||
Sbjct 11192590 GCAAGAGTATGGCCATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGA 11192649
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT--TCAACGGTGTCGGTGGATT 114330
| || ||||| ||||| ||| ||| | | | ||| |||| |||||| | ||
Sbjct 11192650 AGGATTCCTTCCTTGTCTTGGATC--TTGGTCTTGATGTTGTCAATGGTGTCTGAACTTT 11192707
Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || | || | || ||||| || ||||| || ||||| || |||||
Sbjct 11192708 CGACCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGAT-TGCAT 11192758
>seq642
Length=6837
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| ||||| | ||| || || | || ||||| || || ||||||||||||
Sbjct 139 ATACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCG 198
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| ||||| | || || || ||| |||| || | || || ||||||
Sbjct 199 GCCAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGA 258
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| ||| | | || | |||||| | | |||
Sbjct 259 GGAATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCA 318
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || ||||| ||||| || || || ||||||||
Sbjct 319 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq5
Length=16150104
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | | || | ||| | ||| || || || ||||||||||| |||
Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| ||||| ||||| || ||||| || ||| | || | ||||| |||||||| |||
Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| || || ||||| ||||| ||| | | || | |||||||| |||||||||
Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| | ||| | || || || || || ||||| || || |||||||||
Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 6389054
>seq762
Length=4953
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || || | ||| | ||| | || || || || || ||||||||||||
Sbjct 140 ATACCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 199
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || || || | || || || ||| |||| || | ||| || ||||||
Sbjct 200 GCCAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGA 259
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || ||||| ||| | | || | |||||| | | |||
Sbjct 260 GGAATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCC 319
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || |||||||| ||||| || || || ||||||||
Sbjct 320 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| || || ||| ||| ||||| || || |||
Sbjct 4784 GTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGCTTTCCA 4843
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| |||||||| || || ||||| ||||| |||||| ||
Sbjct 4844 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTC 4903
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCC 114355
| | |||| |||||||| | || || |||| || | || |||||
Sbjct 4904 ACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCC 4953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420126939594684
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