Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq762 86.0 5e-12 seq6 86.0 5e-12 >seq1 Length=19836964 Score = 107 bits (118), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||||| ||||||||| ||||||||||| || Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | | |||| |||| ||||| ||||| || ||||| |||||||||||| ||| Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || ||||| || || ||| || | || | | || | || || Sbjct 7692101 ATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG---TCGATCGTGTCGGACGACTCA 7692045 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||||||||||||||||||| Sbjct 7692044 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTTT 7691991 >seq762 Length=4953 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| || ||||||||| ||||||||||| ||||| ||| Sbjct 152 AGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGG 211 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| ||||| ||||| ||||| || || || | |||||||||| Sbjct 212 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCC 256 >seq6 Length=18523719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || |||||||| || ||||||||| ||||||||||| ||||| ||| Sbjct 1438288 AGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCCAAAGTTCGG 1438347 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| ||||| ||||| ||||| || || || | |||||||||| Sbjct 1438348 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCC 1438392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055349288514