Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq762 145 2e-29 seq6 145 2e-29 seq4 140 8e-28 seq642 132 1e-25 seq5 131 4e-25 seq1 113 1e-19 seq2 100 7e-16 seq3 96.9 8e-15 >seq762 Length=4953 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||||| || || || ||||| || || ||||| Sbjct 143 CCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 202 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| || || || ||||| |||||||| || | ||| ||| || Sbjct 203 AAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 262 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || ||||| ||||| || || | || ||| ||| Sbjct 263 ATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCC 319 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 320 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||||| ||||| || || || || Sbjct 4754 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCC 4813 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||| |||||||| || |||| Sbjct 4814 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 4873 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || || || || || || |||||||| || || | || |||| || Sbjct 4874 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTC---TCC 4930 Query 288424 ACTTCGAGCGTGATCGTCTTCCC 288446 || || || ||||| ||||| || Sbjct 4931 ACCTCCAGTGTGATGGTCTTGCC 4953 >seq6 Length=18523719 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||||| || || || ||||| || || ||||| Sbjct 1438279 CCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 1438338 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || ||||| || || || ||||| |||||||| || | ||| ||| || Sbjct 1438339 AAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 1438398 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || ||||| ||||| || || | || ||| ||| Sbjct 1438399 ATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCC 1438455 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 1438456 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505 Score = 132 bits (146), Expect = 1e-25 Identities = 175/240 (73%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| || || | || | ||| ||| || ||||| || || ||||| Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || |||||||| || || ||||| |||||||| || | || ||| || Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || |||||||| || ||||| ||||| || || | || ||| ||| Sbjct 1443301 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCA 1443357 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || ||||| ||||| ||||||||||| |||||||| ||||| ||||||| | || ||||| Sbjct 1443358 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCA-TCTGATATTC 1443416 Score = 114 bits (126), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| || |||||||| || || || ||| Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||||||||| | ||||| || || ||||| || | ||| || |||| Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 || ||||| || ||||| || ||||| || ||||| || || | | || | ||| | Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTG--TGTCTGAACTCTCAA 17514039 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || | ||||| || || || || || |||||||| || |||||||| Sbjct 17514038 CCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 Score = 89.7 bits (98), Expect = 1e-12 Identities = 143/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||||| ||||| || || || || Sbjct 1442889 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCC 1442948 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||| |||||||| || |||| Sbjct 1442949 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1443008 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || || || || || || |||||||| || || | || |||| || Sbjct 1443009 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTC---TCC 1443065 Query 288424 ACTTCGAGCGTGATCGTCTTCCCG 288447 || || || ||||| ||||| ||| Sbjct 1443066 ACCTCCAGTGTGATGGTCTTGCCG 1443089 >seq4 Length=14320061 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| |||| || ||| || ||||| || ||||||||| Sbjct 6306109 CCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCG 6306168 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||||||| || | || ||||| ||||| |||| ||||| || ||| Sbjct 6306169 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 6306228 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || |||||||| || || || || || || || | ||| || || || Sbjct 6306229 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 6306288 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| || || || || ||||| |||||||| Sbjct 6306289 TCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335 >seq642 Length=6837 Score = 132 bits (146), Expect = 1e-25 Identities = 175/240 (73%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| || || | || | ||| ||| || ||||| || || ||||| Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || |||||||| || || ||||| |||||||| || | || ||| || Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || |||||||| || ||||| ||||| || || | || ||| ||| Sbjct 262 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCA 318 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 || ||||| ||||| ||||||||||| |||||||| ||||| ||||||| | || ||||| Sbjct 319 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCA-TCTGATATTC 377 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | ||| || ||||||||| || || || || |||||||| Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60 Query 288394 TTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| || || | || ||| || || ||||| ||||||||||| ||||| Sbjct 61 TTGACGTTGTCGATGGTGTCAGAACTC---TCGACCTCGAGGGTGATCGTCTTTCCGGTT 117 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| |||||||| Sbjct 118 AGGGTTTTGACGAAGATCTGCAT 140 >seq5 Length=16150104 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| || || || || || ||||||||| Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | ||||| || ||||| || | ||||| || ||| Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| |||||||| || || || || | ||| ||||| || Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| || || || || ||||| |||||||| Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055 >seq1 Length=19836964 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || ||||| || | |||||||| | || || || ||||| Sbjct 7692185 TCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAA 7692126 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| ||||| ||||| || || ||||| ||||| ||||| || Sbjct 7692125 ATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG 7692066 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || || || || ||||||||||| || || || || || Sbjct 7692065 TCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACA 7692006 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 7692005 AAGATTTGCATT 7691994 >seq2 Length=13294645 Score = 100 bits (110), Expect = 7e-16 Identities = 125/168 (74%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 268486 TGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTTAAC 268545 ||| | |||||||||||||| | ||| | || ||||| |||| ||||| |||| | Sbjct 9186182 TGGGAGATGTACAAGAAGGCCGAAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTT-C 9186240 Query 268546 GCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATCAAACA 268604 ||| |||| | |||||| ||||| || ||| ||| |||||||||||||||||||| Sbjct 9186241 GCAAGACGGTCGCGACTGG---GAGAATCTAAACGACGGCGAACGACACTTCATCAAACA 9186297 Query 268605 TATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCT 268652 | || | ||||| || | ||| ||||| ||||| |||| ||||| Sbjct 9186298 CGTACTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTCTGGAGAATCT 9186345 >seq3 Length=15215380 Score = 96.9 bits (106), Expect = 8e-15 Identities = 162/232 (70%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || || |||| || ||||| || || ||||| || || Sbjct 11243941 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGC 11243882 Query 288306 GAGCGT-GCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 | || ||| || ||||| | || || || || ||||| || | ||| || | Sbjct 11243881 TAAAGTCGCGACCATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTT 11243822 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421 |||| ||||||||||| || || || || ||||| || || || ||| ||| || Sbjct 11243821 GGATGCCTTCTTTATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCT---TT 11243765 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 11243764 CAACCTCAAGAGTGATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179632378432846