Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq762 145 2e-29
seq6 145 2e-29
seq4 140 8e-28
seq642 132 1e-25
seq5 131 4e-25
seq1 113 1e-19
seq2 100 7e-16
seq3 96.9 8e-15
>seq762
Length=4953
Score = 145 bits (160), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| || || |||||||||| || || || ||||| || || |||||
Sbjct 143 CCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 202
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || ||||| || || || ||||| |||||||| || | ||| ||| ||
Sbjct 203 AAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 262
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| ||||| ||||||||||| || ||||| ||||| || || | || ||| |||
Sbjct 263 ATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCC 319
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 320 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
Score = 87.8 bits (96), Expect = 4e-12
Identities = 142/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | |||| || ||||| ||||| || || || ||
Sbjct 4754 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCC 4813
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || ||||| |||||||| |||||||| || ||||
Sbjct 4814 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 4873
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|||||||| || || || || || || |||||||| || || | || |||| ||
Sbjct 4874 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTC---TCC 4930
Query 288424 ACTTCGAGCGTGATCGTCTTCCC 288446
|| || || ||||| ||||| ||
Sbjct 4931 ACCTCCAGTGTGATGGTCTTGCC 4953
>seq6
Length=18523719
Score = 145 bits (160), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| || || |||||||||| || || || ||||| || || |||||
Sbjct 1438279 CCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGCC 1438338
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || ||||| || || || ||||| |||||||| || | ||| ||| ||
Sbjct 1438339 AAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 1438398
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| ||||| ||||||||||| || ||||| ||||| || || | || ||| |||
Sbjct 1438399 ATACCTTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCC 1438455
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 1438456 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
Score = 132 bits (146), Expect = 1e-25
Identities = 175/240 (73%), Gaps = 7/240 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| |||||||| || || | || | ||| ||| || ||||| || || |||||
Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || |||||||| || || ||||| |||||||| || | || ||| ||
Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| || || || |||||||| || ||||| ||||| || || | || ||| |||
Sbjct 1443301 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCA 1443357
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483
|| ||||| ||||| ||||||||||| |||||||| ||||| ||||||| | || |||||
Sbjct 1443358 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCA-TCTGATATTC 1443416
Score = 114 bits (126), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || ||||| | ||| || |||||||| || || || |||
Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||||||||| | ||||| || || ||||| || | ||| || ||||
Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424
|| ||||| || ||||| || ||||| || ||||| || || | | || | ||| |
Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTG--TGTCTGAACTCTCAA 17514039
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || | ||||| || || || || || |||||||| || ||||||||
Sbjct 17514038 CCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 89.7 bits (98), Expect = 1e-12
Identities = 143/204 (70%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || | |||| || ||||| ||||| || || || ||
Sbjct 1442889 CCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCC 1442948
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || ||||| |||||||| |||||||| || ||||
Sbjct 1442949 AGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1443008
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|||||||| || || || || || || |||||||| || || | || |||| ||
Sbjct 1443009 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTC---TCC 1443065
Query 288424 ACTTCGAGCGTGATCGTCTTCCCG 288447
|| || || ||||| ||||| |||
Sbjct 1443066 ACCTCCAGTGTGATGGTCTTGCCG 1443089
>seq4
Length=14320061
Score = 140 bits (154), Expect = 8e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || ||||| |||| || ||| || ||||| || |||||||||
Sbjct 6306109 CCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCG 6306168
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||||||||| || | || ||||| ||||| |||| ||||| || |||
Sbjct 6306169 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 6306228
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || |||||||| || || || || || || || | ||| || || ||
Sbjct 6306229 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 6306288
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || |||||||| || || || || ||||| ||||||||
Sbjct 6306289 TCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 6306335
>seq642
Length=6837
Score = 132 bits (146), Expect = 1e-25
Identities = 175/240 (73%), Gaps = 7/240 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| |||||||| || || | || | ||| ||| || ||||| || || |||||
Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || |||||||| || || ||||| |||||||| || | || ||| ||
Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| || || || |||||||| || ||||| ||||| || || | || ||| |||
Sbjct 262 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCA 318
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483
|| ||||| ||||| ||||||||||| |||||||| ||||| ||||||| | || |||||
Sbjct 319 ACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCA-TCTGATATTC 377
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/143 (73%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||||| | ||| || ||||||||| || || || || ||||||||
Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60
Query 288394 TTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|| ||||| || || | || ||| || || ||||| ||||||||||| |||||
Sbjct 61 TTGACGTTGTCGATGGTGTCAGAACTC---TCGACCTCGAGGGTGATCGTCTTTCCGGTT 117
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| || |||||||| ||||||||
Sbjct 118 AGGGTTTTGACGAAGATCTGCAT 140
>seq5
Length=16150104
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || ||||| | ||| || || || || || |||||||||
Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || |||||||| | ||||| || ||||| || | ||||| || |||
Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || |||||||| |||||||| || || || || | ||| ||||| ||
Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || |||||||| || || || || ||||| ||||||||
Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055
>seq1
Length=19836964
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || || ||||| || | |||||||| | || || || |||||
Sbjct 7692185 TCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAA 7692126
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| ||| ||||| ||||| || || ||||| ||||| ||||| ||
Sbjct 7692125 ATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGGATCTTCGCCTTCACATTG 7692066
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||| || || || || || ||||||||||| || || || || ||
Sbjct 7692065 TCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACA 7692006
Query 288463 AATATCTGCATT 288474
|| || ||||||
Sbjct 7692005 AAGATTTGCATT 7691994
>seq2
Length=13294645
Score = 100 bits (110), Expect = 7e-16
Identities = 125/168 (74%), Gaps = 5/168 (3%)
Strand=Plus/Plus
Query 268486 TGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTTAAC 268545
||| | |||||||||||||| | ||| | || ||||| |||| ||||| |||| |
Sbjct 9186182 TGGGAGATGTACAAGAAGGCCGAAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTT-C 9186240
Query 268546 GCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATCAAACA 268604
||| |||| | |||||| ||||| || ||| ||| ||||||||||||||||||||
Sbjct 9186241 GCAAGACGGTCGCGACTGG---GAGAATCTAAACGACGGCGAACGACACTTCATCAAACA 9186297
Query 268605 TATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCT 268652
| || | ||||| || | ||| ||||| ||||| |||| |||||
Sbjct 9186298 CGTACTCGCCTTCTTCGCCGCCTCAGACGGAATCGTTCTGGAGAATCT 9186345
>seq3
Length=15215380
Score = 96.9 bits (106), Expect = 8e-15
Identities = 162/232 (70%), Gaps = 7/232 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| ||||| | || || || |||| || ||||| || || ||||| || ||
Sbjct 11243941 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTAGACTCTTTCTGAATGTTATAATCCGC 11243882
Query 288306 GAGCGT-GCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364
| || ||| || ||||| | || || || || ||||| || | ||| || |
Sbjct 11243881 TAAAGTCGCGACCATCTTCGAGCTGATTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTT 11243822
Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421
|||| ||||||||||| || || || || ||||| || || || ||| ||| ||
Sbjct 11243821 GGATGCCTTCTTTATCTTGAATCTTGGCCTTCACATTATCAATCATATCAGAGCT---TT 11243765
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| ||||| || |||| ||||||||| || ||||||||
Sbjct 11243764 CAACCTCAAGAGTGATGGTCTTACCCGTCAAAGTCTTGACAAAGATCTGCAT 11243713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179632378432846
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