Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 >seq2 Length=13294645 Score = 122 bits (134), Expect = 2e-22 Identities = 569/881 (65%), Gaps = 37/881 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||||| || || | || ||||| ||||| |||||||| | ||| | || ||| Sbjct 9186158 TTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCATCTTTCTGG 9186217 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGCGAGAAACTCAATG 242992 || |||| ||||| ||| |||| |||| ||| ||||||| ||||| || || | Sbjct 9186218 ACGGCCGAAGAAGTCGATCTTT-CGCAAGACGGTCG-CGACTGG---GAGAATCTAAACG 9186272 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||| |||||| || |||||||||||| | || | || ||||| | ||| || || || | Sbjct 9186273 ACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAGACGGAATCG 9186332 Query 243053 TGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 243110 | |||| ||||| || || | |||| ||| || || || | ||||| || Sbjct 9186333 TTCTGGAGAATCTCGCTTCCCGA-TTTA-TGTCCGATGTGCAAGTCTCGGAGGCGCGTGC 9186390 Query 243111 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTTC 243166 || || | || ||| | ||| | ||| || || || || || ||| | Sbjct 9186391 TTTCTACGGTTTCCAGATCGCGATTGA--GAA--CATACACTCCGAGATGTACAGTCTCC 9186446 Query 243167 TTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGA 243224 | |||| | |||| ||| || | ||||| || || | || ||| ||| ||||| Sbjct 9186447 TCCTCGA--CACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATCGA 9186504 Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAA 243284 || ||| || || || || || | ||||| ||||||| | || | | Sbjct 9186505 AACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGATCTCA 9186564 Query 243285 ATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAG 243344 | ||||| ||| | ||||||| | | || || |||||||| | || ||||| || Sbjct 9186565 GACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAG 9186624 Query 243345 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 |||||| | || || |||||| || |||| | ||||| || | | || || Sbjct 9186625 CTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAA 9186684 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAA 243463 |||||| ||| || ||||| ||| | || | |||| ||| || || || | Sbjct 9186685 CGAGTTGATCTCACGAGACGAAGGCTTACATTGCGATTTCGCGTG-CCTGATCTA---CA 9186740 Query 243464 AGCTC---CAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATCATCACAGAAGCAG 243517 |||| || ||||| | ||| | || || || |||| || || || | Sbjct 9186741 CGCTCTTGTGGACGAAGCT---CTCCGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCG 9186797 Query 243518 TTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACT 243577 | || | ||| | ||| || | |||||||| | || ||| | | | || |||||| Sbjct 9186798 TCGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAACA 9186857 Query 243578 CTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTT 243637 ||| || ||| | |||||||| || || || || || | |||| ||||| || | Sbjct 9186858 GTGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGT 9186917 Query 243638 ATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAG 243697 | | || |||||| || || |||| | |||||| | || |||||||| | Sbjct 9186918 ACGGTAAGGTGTACGGTGTGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGG 9186977 Query 243698 GGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||||| ||||||||||| ||| | || | ||||| ||| Sbjct 9186978 GGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTACCAA 9187018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102859411642950