Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 9e-24
seq5 93.3 5e-14
seq7 82.4 9e-11
>seq2
Length=13294645
Score = 125 bits (138), Expect = 9e-24
Identities = 157/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124
|| ||||| || ||||| | || || |||||| | ||| ||||||||||| |||||
Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649
Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184
|||| ||||||||||| || || ||| ||||||||||| || || ||||| |||||
Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589
Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244
|| | || | ||| ||||| | | || | || | ||||||||||||||||||
Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532
Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279
|| || || ||| || |||| ||| | ||||||
Sbjct 9186531 GCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497
>seq5
Length=16150104
Score = 93.3 bits (102), Expect = 5e-14
Identities = 207/308 (67%), Gaps = 7/308 (2%)
Strand=Plus/Minus
Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708
|||||||||||| |||| ||||| || || || ||| || || |||||||||||||||
Sbjct 2661954 AATTACCGAGAAGCCTACGGTCTTTTCGCCTGTAACGGAATCCTGTTCAACCACGAGTCA 2661895
Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTC 8768
|| |||||||| | | |||||||| | |||||| || | | || |||
Sbjct 2661894 CCTCGTCGTGGAGAGAACTTCGTGACCAGGAAGATAACAAGAGCCCTGGGACGGATCAAG 2661835
Query 8769 GCGGGT---GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 8825
| |||| ||||| || || | | ||||| || | || || || ||||||
Sbjct 2661834 GTGGGTTTGCAGAGGAAGCTCTT---CCTTGGGAATCTGCAGGCGTCAAGAGATTGGGGA 2661778
Query 8826 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAA 8885
||| ||| || ||||| || |||||||| | | || ||||| || | |||||
Sbjct 2661777 TTCGCAGGGGATTACGTTGAGGCAATGTGGCTGATGTTGCAGCAAGAGAAGCCAGACGAT 2661718
Query 8886 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTTAGG 8945
|| || || || || | ||| ||||| | || |||||| ||||| | | | || ||
Sbjct 2661717 TACGTTGTGGCAACAGAGGAATCACACACTGTGGAGGAGTTTCTTGAGGT-TTCGTTTGG 2661659
Query 8946 GAAGTTGG 8953
| | ||||
Sbjct 2661658 GTACTTGG 2661651
Score = 82.4 bits (90), Expect = 9e-11
Identities = 186/278 (67%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935
||| ||||||||||||||||| | ||||| || || || || | |||||||| |
Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCC--T 10841251
Query 10936 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993
| | ||| || || | | ||| | || || |||||||| ||||| |||||||| ||
Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311
Query 10994 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053
|| || || | || || || | ||||| ||||| ||||| ||||||
Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCC 10841371
Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113
||||| | |||||||| | | || | || || ||| || || | ||| ||
Sbjct 10841372 ACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCA 10841431
Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
|| | |||| ||| | ||||||||| ||||| || ||
Sbjct 10841432 GCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 10841469
>seq7
Length=17055980
Score = 82.4 bits (90), Expect = 9e-11
Identities = 189/281 (67%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935
||| ||||||||||| ||||| || ||||| || || || || | ||||||||| |
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCC--T 4202485
Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993
| | || ||| || | | |||| |||| || || ||||| ||||| || ||||| |||
Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425
Query 10994 CACGGTTGATTTTCACGGGCAACT--TCAAAGATATCTCGGACTCTCTTGGCACCGACAC 11051
|| || |||| | | || ||||| | ||| | || || ||||| ||||
Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACAC 4202367
Query 11052 CCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCAC 11111
| ||||| | |||||||| | | || | ||| || ||| || || | ||| |
Sbjct 4202366 CAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTCTC 4202307
Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152
| || | |||| || | || |||||||| || ||||||
Sbjct 4202306 CAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGGT 4202266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597342720697560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |