Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6 116 4e-21
seq5 116 4e-21
seq1 116 4e-21
seq3 93.3 5e-14
seq762 84.2 2e-11
seq4 84.2 2e-11
>seq6
Length=18523719
Score = 116 bits (128), Expect = 4e-21
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | ||| | ||||||||| | ||| ||| || || || ||||| |||||
Sbjct 17513989 ACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 17513930
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || | || |||||||||||||| ||||| || || | ||||||||| | ||
Sbjct 17513929 GAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGG 17513870
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157
| | ||| || || ||| ||| ||||| | | | ||||| |||| ||
Sbjct 17513869 AATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTC---TC 17513813
Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||| |||||||| ||||| |||| || || ||||||||||||||
Sbjct 17513812 GACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||| || |||||||| || || || || |||| || ||||| || || || ||
Sbjct 17514181 CTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAA 17514122
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135
||||||| ||||||||| | ||| | | ||||||||| ||| | || | ||||
Sbjct 17514121 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTCGCCTTGACGT 17514063
Query 42136 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| ||| || || || | ||||||||||||||||| || ||||
Sbjct 17514062 TATCGATTGTGTCTGAACTC---TCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCT 17514006
Query 42193 TTACAAAGATTTGCAT 42208
| ||||| || |||||
Sbjct 17514005 TGACAAAAATCTGCAT 17513990
Score = 93.3 bits (102), Expect = 5e-14
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || | || ||||||||| | || | || ||||| || ||||||||||| ||
Sbjct 17514445 ACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGC 17514386
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || | || || ||||| || |||||||| ||||||| ||| ||||| | |||
Sbjct 17514385 AAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGG 17514326
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156
| | ||||||||| ||| | |||| |||| | | | ||||| |||| |
Sbjct 17514325 GATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---T 17514270
Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || | || |||||||| || || || || || ||||| || |||||
Sbjct 17514269 CAACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||||||| | || ||| || || ||||||||||||||||| || || | || ||
Sbjct 1438004 ACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCCTCG 1438063
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|||||||| |||||||| ||||| ||||||||||| | |||
Sbjct 1438064 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 1438104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || |||||||||||||| || || | || || |||||||| ||||||||
Sbjct 1442924 CTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 1442983
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
||||| ||||||||||| | ||| | | ||||||||
Sbjct 1442984 GATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 1443022
>seq5
Length=16150104
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| ||||| || |||||| ||||| ||||| || || || || || |
Sbjct 6389270 ACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCC 6389211
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||| || || ||||| || | |||||||||||| | ||| | | ||||||
Sbjct 6389210 GTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTT 6389151
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || ||||| | | | |||||| ||||| || || | || ||
Sbjct 6389150 GTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTAT 6389091
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
||| || |||||||| || || || ||||| ||||| ||
Sbjct 6389090 GGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052
>seq1
Length=19836964
Score = 116 bits (128), Expect = 4e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| | ||| | ||||| || | || |||||| || || |||||||| ||
Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC-GGCTGG 42100
|| |||| | |||| || |||||||| || ||||| || || |||||||| || ||| ||
Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || |||||||| ||| || || | | | | ||||||| ||| || ||
Sbjct 7692101 ATCCCT-TCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| | || || || || |||||||| || || |||||||||||||||||
Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992
>seq3
Length=15215380
Score = 93.3 bits (102), Expect = 5e-14
Identities = 157/221 (71%), Gaps = 10/221 (5%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||||||| | || | ||| |||||||| || |||||||| || || || || |
Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT-CGGCTGGCACGCTCTCCT 42111
|| || ||||| ||||||||||| |||| || || |||| |||| | | || ||||
Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCT-TCCT 11243582
Query 42112 TGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167
||| | ||| | ||||| || | | | || ||||| ||| || || ||||
Sbjct 11243581 TGT-CTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTC---TCAACTTCGAGG 11243526
Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||||||||| || || || || ||||| ||||||||
Sbjct 11243525 GTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
>seq762
Length=4953
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || |||||||||||||| || || | || || |||||||| ||||||||
Sbjct 4789 CTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 4848
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
||||| ||||||||||| | ||| | | ||||||||
Sbjct 4849 GATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 4887
>seq4
Length=14320061
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || || || || || |||| || |||||||| || |||||
Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | |||||||||||| | || | | ||||||||| ||| || |||| |
Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||| || || || |||| || || || || || ||||| || || ||
Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324
Query 42198 AAGATTTGCATTTT 42211
||||| ||||| ||
Sbjct 6306325 AAGATCTGCATCTT 6306338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543202906736880
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