Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 116 4e-21 seq5 116 4e-21 seq1 116 4e-21 seq3 93.3 5e-14 seq762 84.2 2e-11 seq4 84.2 2e-11 >seq6 Length=18523719 Score = 116 bits (128), Expect = 4e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||||||||| | ||| ||| || || || ||||| ||||| Sbjct 17513989 ACCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 17513930 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || |||||||||||||| ||||| || || | ||||||||| | || Sbjct 17513929 GAGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGG 17513870 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||| || || ||| ||| ||||| | | | ||||| |||| || Sbjct 17513869 AATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTC---TC 17513813 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| |||| || || |||||||||||||| Sbjct 17513812 GACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| || || || || |||| || ||||| || || || || Sbjct 17514181 CTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAA 17514122 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||||| ||||||||| | ||| | | ||||||||| ||| | || | |||| Sbjct 17514121 GATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTCGCCTTGACGT 17514063 Query 42136 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| || || || | ||||||||||||||||| || |||| Sbjct 17514062 TATCGATTGTGTCTGAACTC---TCAACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCT 17514006 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| || ||||| Sbjct 17514005 TGACAAAAATCTGCAT 17513990 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||||||||| | || | || ||||| || ||||||||||| || Sbjct 17514445 ACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGC 17514386 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| || |||||||| ||||||| ||| ||||| | ||| Sbjct 17514385 AAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGG 17514326 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| | |||| |||| | | | ||||| |||| | Sbjct 17514325 GATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---T 17514270 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | || |||||||| || || || || || ||||| || ||||| Sbjct 17514269 CAACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||| || || ||||||||||||||||| || || | || || Sbjct 1438004 ACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCCTCG 1438063 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||||| |||||||| ||||| ||||||||||| | ||| Sbjct 1438064 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 1438104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||||||| || || | || || |||||||| |||||||| Sbjct 1442924 CTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 1442983 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||| ||||||||||| | ||| | | |||||||| Sbjct 1442984 GATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 1443022 >seq5 Length=16150104 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||| ||||| || |||||| ||||| ||||| || || || || || | Sbjct 6389270 ACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCC 6389211 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||| || || ||||| || | |||||||||||| | ||| | | |||||| Sbjct 6389210 GTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTT 6389151 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || ||||| | | | |||||| ||||| || || | || || Sbjct 6389150 GTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTAT 6389091 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || |||||||| || || || ||||| ||||| || Sbjct 6389090 GGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052 >seq1 Length=19836964 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||||| || | || |||||| || || |||||||| || Sbjct 7692221 CCTCCTCTCAGACGGAGGACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 7692162 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC-GGCTGG 42100 || |||| | |||| || |||||||| || ||||| || || |||||||| || ||| || Sbjct 7692161 AGTGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGG 7692102 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| || || | | | | ||||||| ||| || || Sbjct 7692101 ATCCCT-TCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAAC 7692043 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || |||||||| || || ||||||||||||||||| Sbjct 7692042 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATTTGCATTTT 7691992 >seq3 Length=15215380 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | ||| |||||||| || |||||||| || || || || | Sbjct 11243700 ACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACC 11243641 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT-CGGCTGGCACGCTCTCCT 42111 || || ||||| ||||||||||| |||| || || |||| |||| | | || |||| Sbjct 11243640 ATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCT-TCCT 11243582 Query 42112 TGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167 ||| | ||| | ||||| || | | | || ||||| ||| || || |||| Sbjct 11243581 TGT-CTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTC---TCAACTTCGAGG 11243526 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||||||||| || || || || ||||| |||||||| Sbjct 11243525 GTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485 >seq762 Length=4953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||||||| || || | || || |||||||| |||||||| Sbjct 4789 CTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 4848 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||| ||||||||||| | ||| | | |||||||| Sbjct 4849 GATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 4887 >seq4 Length=14320061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 6306145 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAA 6306204 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 6306205 ATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 6306264 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| || || || |||| || || || || || ||||| || || || Sbjct 6306265 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACG 6306324 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 6306325 AAGATCTGCATCTT 6306338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543202906736880