Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 3e-28
seq5 116 4e-21
seq1 114 1e-20
seq4 113 5e-20
seq762 104 2e-17
seq3 95.1 1e-14
seq642 82.4 8e-11
>seq6
Length=18523719
Score = 140 bits (154), Expect = 3e-28
Identities = 161/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| | ||| | || || ||||| || |||||||| || |||| ||||| | ||
Sbjct 17513974 AAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATC 17513915
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| |||||||| ||||| | || |||| ||||||||| ||||||||||| ||||| ||
Sbjct 17513914 TTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATC 17513855
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| | | |||||||| ||| || | || ||| | || || || | ||| | ||
Sbjct 17513854 TTGGA-TCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGG 17513796
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||| || |||||||| || || ||||||||
Sbjct 17513795 TCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | ||| || || ||||| ||||||||||| |||| |||||| |||||
Sbjct 17514201 AGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCGAGGGTGCGTCCGTCT 17514142
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|||||||| || || ||| | ||||| | ||||||||| || || || ||||| || ||
Sbjct 17514141 TCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC 17514082
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | ||| || || || || | ||| | |||
Sbjct 17514081 TGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTGATGGTT 17514022
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || || ||||| |||||
Sbjct 17514021 TTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | || || || ||||||| ||||| || || || ||||||||||| ||
Sbjct 1438278 ACCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGC 1438337
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || |||| || | |||||| ||||| | || || | |||||| || |||||
Sbjct 1438338 CAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGG 1438397
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||| ||||| || || || | | || ||||| || || | || ||| | ||||
Sbjct 1438398 AATACCTTCCTTATCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 1438456
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | |||||||||||| | ||| || ||||| || |||||
Sbjct 1438457 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 1438505
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| ||||| ||||| || ||||||||||| || | ||||| | || |||||||||
Sbjct 1442913 TGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGC 1442972
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
|| || || | ||||| ||||||||||| || || |||||||| || ||||| || ||
Sbjct 1442973 TTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTT 1443031
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || | ||||| ||||| ||||| || || |||||||| || | ||||| | ||
Sbjct 1438001 AGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCCAGTGTGCGACCATCC 1438060
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| || || | ||||| ||||||||||| || || || ||||| || |||
Sbjct 1438061 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTTATCT 1438120
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 1438121 TGGATCTT 1438128
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| || || | || | || ||||| || || ||||||||||| ||
Sbjct 1443180 ACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 1443239
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || ||||||| | |||||| ||||| | || |||| ||||| || |||||
Sbjct 1443240 CAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGG 1443299
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||| || || || || || | | || ||||| || || | || ||| | || |
Sbjct 1443300 AATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAA 1443358
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | ||||| ||||| | ||| || ||||| || |||||
Sbjct 1443359 CCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
>seq5
Length=16150104
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | |||||| || || ||||||||||| || |||| || || |||||
Sbjct 6389266 AGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCT 6389207
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||| || ||||| |||| | ||||||||||| || |||||||| || || ||
Sbjct 6389206 TCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCC 6389147
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| || | || || || || || || | |||| |||
Sbjct 6389146 TGGA-TCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGT 6389088
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||| || || | ||||| ||||| || ||||| ||
Sbjct 6389087 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGTT 6389052
>seq1
Length=19836964
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| |||||| || || || ||||||||||| |||| || | | ||||||| ||||||
Sbjct 7692197 TGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCCAGCTGC 7692138
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| ||||| |||| || |||||||| || || || || ||||| || ||||| || ||
Sbjct 7692137 TTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGGATCTTC 7692078
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | || || | || || |||| |||| ||||| || ||
Sbjct 7692077 GCCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTCCCCGTT 7692018
Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446
| ||||| || || |||||||||||
Sbjct 7692017 AGGGTTTTCACAAAGATTTGCATTTT 7691992
>seq4
Length=14320061
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| |||||||| || || |||||||| || |||| |||||| ||||
Sbjct 6306124 AGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCC 6306183
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| |||||||| ||||| |||| | ||||||||||| ||||| |||||||| || ||
Sbjct 6306184 TCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 6306243
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || || || || || | || | |||
Sbjct 6306244 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTC 6306303
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| || || | ||||| ||||| || ||||| ||
Sbjct 6306304 TTCCCTGTTAGGGTTTTCACGAAGATCTGCATCTT 6306338
>seq762
Length=4953
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | || || || ||||||| ||||| || || || ||||||||||| ||
Sbjct 142 ACCACCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGC 201
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || |||| || | |||||| ||||| | || || | |||||| || |||||
Sbjct 202 CAAAGTTCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGTCTCTGCTGATCCGGAGG 261
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||| ||||| || || || | | || ||||| || || | || ||| | ||||
Sbjct 262 AATACCTTCCTTATCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCA 320
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | |||||||||||| | ||| || ||||| || |||||
Sbjct 321 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCAT 369
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| ||||| ||||| || ||||||||||| || | ||||| | || |||||||||
Sbjct 4778 TGAAGGGTCGACTCTTTCTGGATGTTGTAATCAGCCAGTGTGCGACCATCCTCAAGCTGC 4837
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
|| || || | ||||| ||||||||||| || || |||||||| || ||||| || ||
Sbjct 4838 TTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTT 4896
>seq3
Length=15215380
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| || |||| || ||||| ||||| |||||||||||||| | |||||| | || ||
Sbjct 11243694 CACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTC 11243635
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
||||| || || || | |||| | || ||||| || | || ||||| || |||||
Sbjct 11243634 GAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTG 11243575
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| ||| ||||||| || || || || || ||||| | || | ||| ||
Sbjct 11243574 AATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTT 11243515
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| || | ||||| || || ||||||||
Sbjct 11243514 GCCAGTGAGTGTTTTCACAAATATTTGCAT 11243485
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| ||||||| || ||||| ||||| ||||||||||| || | || | | || ||
Sbjct 11192550 CACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCCGCAAGAGTATGGCCATCCTC 11192609
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
|||||| || |||||| | || |||| |||||| || ||| | |||||||| || |||||
Sbjct 11192610 AAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGAAGGATTCCTTCCTTGTCTTG 11192669
Query 64354 TATTTT 64359
|| ||
Sbjct 11192670 GATCTT 11192675
>seq642
Length=6837
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| || || | || | || ||||| || || ||||||||||| ||
Sbjct 141 ACCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 200
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || ||||||| | |||||| ||||| | || |||| ||||| || |||||
Sbjct 201 CAAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGG 260
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||| || || || || || | | || ||||| || || | || ||| | || |
Sbjct 261 AATACCCTCCTTGTCCTGGA-TCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCAA 319
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | ||||| ||||| | ||| || ||||| || |||||
Sbjct 320 CCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499635700219080
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