Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq5 98.7 1e-15 seq4 96.9 3e-15 seq6 91.5 1e-13 >seq2 Length=13294645 Score = 114 bits (126), Expect = 1e-20 Identities = 341/517 (66%), Gaps = 22/517 (4%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || ||||| ||| || || |||||||| |||||||||||||| | | | | || Sbjct 9186512 CCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGAT-CTCAG--ACT 9186568 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | |||||| | || || || |||||| ||||| || | || || ||||| ||||| Sbjct 9186569 TTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTC 9186628 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 | | || || | | |||| | ||| | |||||||| | || ||| ||||||| Sbjct 9186629 TGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAG 9186688 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGC 52568 ||||| || || |||||||| | || || || |||||||| ||||| | | | Sbjct 9186689 TTGATCTCACGAGACGAAGGCTTACATTGCGATTTCGCGTGCCTGATCTACACG-CTCTT 9186747 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGA---GCATGTTCAAGGAGGCGGTGGCT 52625 ||| |||| | || || | | ||| || || || || || | Sbjct 9186748 GTGGACGAA-----GCTCTCCGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCGTCGAG 9186802 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| | ||||||| | | |||||||||| || | || | || ||||| ||| Sbjct 9186803 ATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAA----CAG 9186858 Query 52686 T--CC--ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 | || ||| | ||||||| ||||||||||| ||| | || |||| | ||||||| | Sbjct 9186859 TGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGTA 9186918 Query 52742 GCCAAAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 ||| | | | | || ||||||||||| | ||| | || |||||| ||| Sbjct 9186919 CGGTAAGGTGTACGGTG-TGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGG 9186977 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || || ||||| ||||||||| |||| ||||| || Sbjct 9186978 GGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTA 9187014 >seq5 Length=16150104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| ||| || || ||||| |||| Sbjct 6389248 GACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCG 6389189 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | |||| ||||| |||||||| || || || || ||||| ||| || ||| | | Sbjct 6389188 AAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGACA 6389129 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || || ||||| | || | || || || || || ||||| Sbjct 6389128 TTG-TCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTT 6389070 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 6389069 CACGAAGATCTGCATG 6389054 >seq4 Length=14320061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 6306142 GATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCG 6306201 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | ||||| ||||||||||| || ||||| ||||| ||| || || | | Sbjct 6306202 AAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACA 6306261 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||||| || | || || || || || ||||| Sbjct 6306262 TTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTT 6306320 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 6306321 CACGAAGATCTGCAT 6306335 >seq6 Length=18523719 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||||| | ||| | || ||||| | | | ||||| || || ||||||||||| || Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929 Query 138447 CATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 ||| |||| || || || || ||||||| |||| || | ||| ||||||||| Sbjct 17513928 ---AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTC 138563 || || || ||||| || ||| ||| ||| | |||| || | |||||| | ||| Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTG-TCGATGGTGTCAGAGCTCTC 17513813 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || || || || | |||||| ||||| || ||||| Sbjct 17513812 GACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||| || || ||||||||| | Sbjct 17514672 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCC 17514613 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || ||||| || | |||| || | ||||||||||||||| Sbjct 17514612 AAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGG 17514553 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | ||| || | ||||| | ||| | Sbjct 17514552 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTCACGTTG-TCGATTGTGTCTGAGCTCTCAA 17514495 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| ||| || ||||| || ||||| Sbjct 17514494 CCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | || | | |||| ||||| || || ||||| || | | Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATC-CGC 17514386 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| ||||| || ||||| || | |||| || | ||||||||| || | Sbjct 17514385 A-AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTG 17514327 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCC 138564 | || ||||| ||||| ||| | |||| || | | || | ||||| | ||| Sbjct 17514326 GGATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCA 17514268 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||| || || || ||||| |||||||||||||| Sbjct 17514267 ACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253361821040