Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 114 1e-20
seq5 98.7 1e-15
seq4 96.9 3e-15
seq6 91.5 1e-13
>seq2
Length=13294645
Score = 114 bits (126), Expect = 1e-20
Identities = 341/517 (66%), Gaps = 22/517 (4%)
Strand=Plus/Plus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388
|| ||||| ||| || || |||||||| |||||||||||||| | | | | ||
Sbjct 9186512 CCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGAT-CTCAG--ACT 9186568
Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448
| |||||| | || || || |||||| ||||| || | || || ||||| |||||
Sbjct 9186569 TTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCCGGTAGCTTC 9186628
Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508
| | || || | | |||| | ||| | |||||||| | || ||| |||||||
Sbjct 9186629 TGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTCTCCAACGAG 9186688
Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGC 52568
||||| || || |||||||| | || || || |||||||| ||||| | | |
Sbjct 9186689 TTGATCTCACGAGACGAAGGCTTACATTGCGATTTCGCGTGCCTGATCTACACG-CTCTT 9186747
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGA---GCATGTTCAAGGAGGCGGTGGCT 52625
||| |||| | || || | | ||| || || || || || |
Sbjct 9186748 GTGGACGAA-----GCTCTCCGAGGAGCGCGTGAAGTCAATCGTCTGCGACGCCGTCGAG 9186802
Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685
||||| | ||||||| | | |||||||||| || | || | || ||||| |||
Sbjct 9186803 ATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTAGGGATGAA----CAG 9186858
Query 52686 T--CC--ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| || ||| | ||||||| ||||||||||| ||| | || |||| | ||||||| |
Sbjct 9186859 TGACCTGATGAGTCAGTACATTGAGTTTGTGGCAGATAGGCTTTTGGGGGCGCTCGGGTA 9186918
Query 52742 GCCAAAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
||| | | | | || ||||||||||| | ||| | || |||||| |||
Sbjct 9186919 CGGTAAGGTGTACGGTG-TGGCTAATCCGTTTGATTGGATGGAGTTAATCTCGCTTCAGG 9186977
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || || ||||| ||||||||| |||| ||||| ||
Sbjct 9186978 GGAAAACAAACTTCTTCGAGAAGAGAGTTGGCGATTA 9187014
>seq5
Length=16150104
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| | ||||| ||| || || ||||| ||||
Sbjct 6389248 GACTCCTTCTGAATGTTGTAGTCGGCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCG 6389189
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| |||| ||||| |||||||| || || || || ||||| ||| || ||| | |
Sbjct 6389188 AAAATTAATCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGACA 6389129
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| || || ||||| | || | || || || || || |||||
Sbjct 6389128 TTG-TCGATGGTGTCGGAGGATTCGACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTT 6389070
Query 138600 TACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 6389069 CACGAAGATCTGCATG 6389054
>seq4
Length=14320061
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || |||||||||||| | || || ||||||||| || || ||||
Sbjct 6306142 GATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCG 6306201
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || | ||||| ||||||||||| || ||||| ||||| ||| || || | |
Sbjct 6306202 AAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACA 6306261
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||||| ||||||| || | || || || || || |||||
Sbjct 6306262 TTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTTTT 6306320
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 6306321 CACGAAGATCTGCAT 6306335
>seq6
Length=18523719
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
||||||| | ||| | || ||||| | | | ||||| || || ||||||||||| ||
Sbjct 17513988 CCGCCTCTAAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCG 17513929
Query 138447 CATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504
||| |||| || || || || ||||||| |||| || | ||| |||||||||
Sbjct 17513928 ---AGTGTGCGACCATCTTCTAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGA 17513872
Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTC 138563
|| || || ||||| || ||| ||| ||| | |||| || | |||||| | |||
Sbjct 17513871 GGAATTCCCTCTTTATCTTGGATCTTTGCTTTGACATTG-TCGATGGTGTCAGAGCTCTC 17513813
Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||| || | || || || || | |||||| ||||| || |||||
Sbjct 17513812 GACCTCGAGAGTGATGGTCTTGCCTGTTAAAGTTTTCACAAAGATTTGCAT 17513762
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| || || | | |||||||| || || ||||||||| |
Sbjct 17514672 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGCC 17514613
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || ||||| || | |||| || | |||||||||||||||
Sbjct 17514612 AAAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGCCTCTGTTGGTCCGGAGGG 17514553
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || | ||| || | ||||| | ||| |
Sbjct 17514552 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTCACGTTG-TCGATTGTGTCTGAGCTCTCAA 17514495
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || |||| ||| || ||||| || |||||
Sbjct 17514494 CCTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 17514446
Score = 82.4 bits (90), Expect = 8e-11
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || | || | | |||| ||||| || || ||||| || | |
Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATC-CGC 17514386
Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
| ||| |||| ||||| || ||||| || | |||| || | ||||||||| || |
Sbjct 17514385 A-AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTG 17514327
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCC 138564
| || ||||| ||||| ||| | |||| || | | || | ||||| | |||
Sbjct 17514326 GGATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCA 17514268
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | || | ||||| || || || ||||| ||||||||||||||
Sbjct 17514267 ACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496253361821040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |