Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 1e-13
seq4 87.8 1e-12
seq1 87.8 1e-12
seq6 82.4 5e-11
>seq3
Length=15215380
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || || ||||| ||||||||||| || | | | || || | |||
Sbjct 11243687 TGAAGTGTTGATTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCGAGCTGT 11243628
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| |||||| | || || | || |||||| | || ||||||||||| ||| ||
Sbjct 11243627 TTACCAGCGAAGATGAATCTCTATTGGTCCGGCGCGATCCCTTCCTTGTCTTGAATCTTT 11243568
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| |||||| | || | ||| || | | || || || | |||||||||||| || ||
Sbjct 11243567 GTCTTTACATTATCAACAGTGTCTGAACTCTCAACTTCGAGGGTAATGGTTTTGCCAGTG 11243508
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| ||||||||
Sbjct 11243507 AGTGTTTTCACAAATATTTGCAT 11243485
>seq4
Length=14320061
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|||||||| || || || || |||||||| ||| ||| | | |||| || | ||
Sbjct 6306133 TGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGC 6306192
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | ||||| ||||| ||||| || |||||||||||||| || |||
Sbjct 6306193 TTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTG 6306252
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || || ||| || || || | |||||| || || |||||
Sbjct 6306253 GCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTT 6306312
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181
|| ||||| || || || ||||| ||||
Sbjct 6306313 AGGGTTTTCACGAAGATCTGCATCTTTG 6306340
>seq1
Length=19836964
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| || || || || || ||||||||||| ||| | ||| |||||||
Sbjct 7692203 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCC 7692144
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || ||| | |||| |||||| || || || || |||||||||||
Sbjct 7692143 AGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGG 7692084
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || || ||| | || || || ||| || || |||| ||| || || ||
Sbjct 7692083 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTC 7692024
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
|| || || ||||| ||||| |||||||| |||
Sbjct 7692023 CCCGTTAGGGTTTTCACAAAGATTTGCATTTTT 7691991
>seq6
Length=18523719
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | | || || | ||| || ||||| || ||||| ||||||||||| |
Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | ||||||| | ||||| || || | || | | ||| ||||| |||
Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||| || || || | || || || || | | || ||
Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACC 17514037
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || |||||||| || || || || || |||||||| ||||||
Sbjct 17514036 TCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCATA 17513989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357385653723245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |