Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 129 6e-25
seq5 120 3e-22
seq642 107 2e-18
seq4 107 2e-18
seq762 104 2e-17
seq1 84.2 2e-11
>seq6
Length=18523719
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| |||| |||||||| | || | || || || || || ||||||||||| |
Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || |||||||| |||||| |||| | || ||| || || || ||
Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||||||| ||| | | ||| |||| | |||| ||||| | ||||| ||
Sbjct 17514324 ATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAAC 17514266
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||| ||||| || ||||| ||||||||||||||
Sbjct 17514265 CTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||| | ||| | ||||||||| ||||| || |||||||| |
Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || |||||||| || || |||| | || |||||| || || ||
Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || ||||||||| || ||| ||||| | |||| ||||| | |||||| ||
Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACC 17514037
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | |||||||| || || || || ||||||||||||||
Sbjct 17514036 TCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || || || || || || ||||||||| ||
Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||| ||||| ||| |||| | | |||||||| |||||
Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| |||||||||||| ||| || |||| | |||| |||| |||||| | || || |
Sbjct 1443301 ATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTG-TCGATGGTGTCAGAGCTTTCAA 1443358
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| |||| ||| | || || ||||| ||||| || || || ||||||||
Sbjct 1443359 CCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407
Score = 102 bits (112), Expect = 8e-17
Identities = 134/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||||| | || |||||||| || ||||||||||| ||
Sbjct 1437986 CCACCACGGAGACGGAGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCC 1438045
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || ||||| ||||||||| |||| | |||||||| || || ||
Sbjct 1438046 AGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1438105
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||| || ||| || ||| | |||| || | |||||||| ||||| ||
Sbjct 1438106 ATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTG-TCAATGGTGTCCGAGCTCTCCAC 1438164
Query 127066 TTC 127068
||
Sbjct 1438165 CTC 1438167
>seq5
Length=16150104
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | || | ||||| ||| | ||| ||||| || ||||| ||||| |||
Sbjct 6389284 GCGCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCG 6389225
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | ||| || || || |||||||| || ||| | || ||||||||||| || ||
Sbjct 6389224 GCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGT 6389165
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || |||||||||||| ||| ||| |||| | |||| |||||| | |||
Sbjct 6389164 GGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCG 6389105
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| || | ||| | || || || || || ||||| || || |||||||||
Sbjct 6389104 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 6389054
>seq642
Length=6837
Score = 107 bits (118), Expect = 2e-18
Identities = 110/141 (78%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|| ||| ||||||| | |||||| || || || || ||||||||||| |||||| |
Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60
Query 127034 TTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
|||| |||| |||| |||||| | ||||||||| |||| ||| | ||| || ||||| ||
Sbjct 61 TTGACGTTG-TCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAG 119
Query 127093 AGTTTTTACAAAAATCTGCAT 127113
||||| || || ||||||||
Sbjct 120 GGTTTTGACGAAGATCTGCAT 140
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || || || || || || ||||||||| ||
Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||| ||||| ||| |||| | | |||||||| |||||
Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| |||||||||||| ||| || |||| | |||| |||| |||||| | || || |
Sbjct 262 ATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTG-TCGATGGTGTCAGAGCTTTCAA 319
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| |||| ||| | || || ||||| ||||| || || || ||||||||
Sbjct 320 CCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368
>seq4
Length=14320061
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||| ||| | | ||||| || || ||||| |||||
Sbjct 6306139 GTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCG 6306198
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||||||||||||| || ||||| || || ||||||||| ||| || ||||
Sbjct 6306199 GCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 6306258
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||| |||| ||| | || || || || || |||
Sbjct 6306259 ACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTT 6306318
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 6306319 TTCACGAAGATCTGCAT 6306335
>seq762
Length=4953
Score = 104 bits (114), Expect = 2e-17
Identities = 105/134 (78%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GT 127039
||||||| | |||||| || || || || ||||||||||| ||| ||| ||||| ||
Sbjct 9 AGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTCGCCTTGACGT 68
Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099
|| |||| |||||| | ||||||||| |||| ||| | ||| || ||||| || |||||
Sbjct 69 TG-TCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAGCGTTTTG 127
Query 127100 ACAAAAATCTGCAT 127113
|| || ||||||||
Sbjct 128 ACGAAGATCTGCAT 141
>seq1
Length=19836964
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | ||| ||||| || || || |||||||| | | || | || ||
Sbjct 7692203 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCC 7692144
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| || || ||| | |||| ||||||||||| || || || || |||||||| |
Sbjct 7692143 AGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGG 7692084
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| ||| ||| | | |||| ||||| | ||| || || | ||| | ||| ||
Sbjct 7692083 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTC 7692024
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || ||||| ||||| || |||||
Sbjct 7692023 CCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475492139941680
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