Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 129 6e-25 seq5 120 3e-22 seq642 107 2e-18 seq4 107 2e-18 seq762 104 2e-17 seq1 84.2 2e-11 >seq6 Length=18523719 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| |||||||| | || | || || || || || ||||||||||| | Sbjct 17514444 CCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCA 17514385 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| |||||| |||| | || ||| || || || || Sbjct 17514384 AGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 17514325 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| | | ||| |||| | |||| ||||| | ||||| || Sbjct 17514324 ATCCCTTCCTTGTCC-TGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTCTCAAC 17514266 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| || ||||| |||||||||||||| Sbjct 17514265 CTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | ||||||||| ||||| || |||||||| | Sbjct 17514216 CCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCCGCG 17514157 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || |||||||| || || |||| | || |||||| || || || Sbjct 17514156 AGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 17514097 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| || ||| ||||| | |||| ||||| | |||||| || Sbjct 17514096 ATCCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTATCGATTGTGTCTGAACTCTCAACC 17514037 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || || || || |||||||||||||| Sbjct 17514036 TCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || || || ||||||||| || Sbjct 1443181 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 1443240 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| ||||| ||| |||| | | |||||||| ||||| Sbjct 1443241 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 1443300 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || |||| | |||| |||| |||||| | || || | Sbjct 1443301 ATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTG-TCGATGGTGTCAGAGCTTTCAA 1443358 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || ||||| ||||| || || || |||||||| Sbjct 1443359 CCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 1443407 Score = 102 bits (112), Expect = 8e-17 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || |||||||| || ||||||||||| || Sbjct 1437986 CCACCACGGAGACGGAGGACCAAATGAAGGGTCGACTCTTTCTGGATATTGTAATCAGCC 1438045 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||||||| |||| | |||||||| || || || Sbjct 1438046 AGTGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1438105 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || ||| || ||| | |||| || | |||||||| ||||| || Sbjct 1438106 ATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTG-TCAATGGTGTCCGAGCTCTCCAC 1438164 Query 127066 TTC 127068 || Sbjct 1438165 CTC 1438167 >seq5 Length=16150104 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||||| ||| | ||| ||||| || ||||| ||||| ||| Sbjct 6389284 GCGCCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCG 6389225 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | ||| || || || |||||||| || ||| | || ||||||||||| || || Sbjct 6389224 GCGAGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGT 6389165 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| ||| |||| | |||| |||||| | ||| Sbjct 6389164 GGAATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCG 6389105 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || || || || || ||||| || || ||||||||| Sbjct 6389104 ACCTCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 6389054 >seq642 Length=6837 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||| | |||||| || || || || ||||||||||| |||||| | Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60 Query 127034 TTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| |||| |||| |||||| | ||||||||| |||| ||| | ||| || ||||| || Sbjct 61 TTGACGTTG-TCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAG 119 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 ||||| || || |||||||| Sbjct 120 GGTTTTGACGAAGATCTGCAT 140 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || || || ||||||||| || Sbjct 142 CCACCACGGAGTCTGAGAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 201 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| ||||| ||| |||| | | |||||||| ||||| Sbjct 202 AAAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGAGGA 261 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || |||| | |||| |||| |||||| | || || | Sbjct 262 ATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTG-TCGATGGTGTCAGAGCTTTCAA 319 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || ||||| ||||| || || || |||||||| Sbjct 320 CCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 368 >seq4 Length=14320061 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | | ||||| || || ||||| ||||| Sbjct 6306139 GTCGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTTCCG 6306198 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| || || ||||||||| ||| || |||| Sbjct 6306199 GCGAAAATCAATCGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 6306258 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| |||| ||| | || || || || || ||| Sbjct 6306259 ACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATTGTCTTCCCTGTTAGGGTT 6306318 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 6306319 TTCACGAAGATCTGCAT 6306335 >seq762 Length=4953 Score = 104 bits (114), Expect = 2e-17 Identities = 105/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GT 127039 ||||||| | |||||| || || || || ||||||||||| ||| ||| ||||| || Sbjct 9 AGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTCGCCTTGACGT 68 Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 || |||| |||||| | ||||||||| |||| ||| | ||| || ||||| || ||||| Sbjct 69 TG-TCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAGCGTTTTG 127 Query 127100 ACAAAAATCTGCAT 127113 || || |||||||| Sbjct 128 ACGAAGATCTGCAT 141 >seq1 Length=19836964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||| ||||| || || || |||||||| | | || | || || Sbjct 7692203 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTCCCGTCTTCC 7692144 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || ||| | |||| ||||||||||| || || || || |||||||| | Sbjct 7692143 AGCTGCTTCCCGGCGAAAATCAGACGCTGCTGATCCGGCGGGATCCCTTCCTTGTCTTGG 7692084 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || ||| ||| | | |||| ||||| | ||| || || | ||| | ||| || Sbjct 7692083 ATCTTCGCCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCTAGGGTTATCGTCTTC 7692024 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| ||||| || ||||| Sbjct 7692023 CCCGTTAGGGTTTTCACAAAGATTTGCAT 7691995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492139941680