Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 5e-25
seq6 113 4e-20
seq4 109 5e-19
seq5 104 2e-17
seq642 89.7 5e-13
>seq3
Length=15215380
Score = 129 bits (142), Expect = 5e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | |||||| || || || ||||||||||||||||| || |||||
Sbjct 11243714 ATCCCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCT 11243655
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | ||||| || ||| | || |||| | |||||||||
Sbjct 11243654 GCAAGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGC 11243595
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
| || ||||| || |||||||| ||| || | || || ||||| ||| |||
Sbjct 11243594 GCGATCCCTTCCTTGTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCA 11243535
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||||| |||| |||||||| || || ||||| ||||| |||||||||
Sbjct 11243534 ACTTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCATC 11243484
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/231 (69%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | |||||| ||||| || ||||||||||||||||| || |||||
Sbjct 11192530 ATCCCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCC 11192589
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | ||||| || || | || | | ||||| |||||
Sbjct 11192590 GCAAGAGTATGGCCATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGA 11192649
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
| || ||||| || ||||| || || ||||| || | |||||| ||| |||
Sbjct 11192650 AGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCG 11192709
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || ||||| | || ||||| || ||||| || ||||| | |||||||
Sbjct 11192710 ACCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGA-TTGCATC 11192759
>seq6
Length=18523719
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | |||||| || || || ||||||||||| |||||||| |||||
Sbjct 17514447 ATACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCC 17514388
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| |||| ||||| || ||| | || | || || ||||| ||
Sbjct 17514387 GCAAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGT 17514328
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||| || || ||||| ||| |||| || | || | ||||| || |||
Sbjct 17514327 GGGATCCCTTCCTTGTCCTGAATCTTTGCCTTGA-CGTTATCGATTGTGTCTGAGCTCTC 17514269
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||||| ||||| ||||| || ||||| |||||||| |||||
Sbjct 17514268 AACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| | ||| || || || || || ||||| || || || || || | ||| ||
Sbjct 17513971 CACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTC 17513912
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
| || || || ||| | || | | ||||||||||| ||||| || |||||||||||
Sbjct 17513911 TAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTG 17513852
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| ||| ||||| || | |||||| || |||||| |||||||| | || ||
Sbjct 17513851 GATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTT 17513792
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| |||| |||||| ||||| |||||||||
Sbjct 17513791 GCCTGTTAAAGTTTTCACAAAGATTTGCATC 17513761
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| ||||| ||||| || ||||||||||| || |||||
Sbjct 17514219 ATACCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCC 17514160
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| || || | ||||| || || | || | || |||||||| ||
Sbjct 17514159 GCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGT 17514100
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||| || || ||||| || |||| || | || | ||||| ||| |||
Sbjct 17514099 GGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGA-CGTTATCGATTGTGTCTGAACTCTC 17514041
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| | |||||||| || || || || |||||||| |||||
Sbjct 17514040 AACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990
>seq4
Length=14320061
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || || || || || |||||||| ||||| || || ||| |
Sbjct 6306109 CCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCG 6306168
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || || | || ||||| ||| | |||||||| ||||||||||| ||
Sbjct 6306169 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 6306228
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||| || || || || || |||| || | ||||||||| ||||||||
Sbjct 6306229 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 6306288
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| |||| || || || ||||| ||||| || || || ||||||
Sbjct 6306289 TCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATC 6306336
>seq5
Length=16150104
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| ||||||||||| || ||||| || || || || ||| |
Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || |||| ||||| || ||| | || ||||| ||||||||||| |||
Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || || || || || || ||||| || | ||||||||| || |||||
Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || || || ||||| ||||| || || || |||||
Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055
>seq642
Length=6837
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|| ||| | ||||| | ||||||||||| || || || || || |||||||||||
Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60
Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319
|||| || | || | |||||| ||| |||||| ||||| || | ||| || ||||||||
Sbjct 61 TTGA-CGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAG 119
Query 45320 AGTTTTTACAAAAATTTGCAT 45340
||||| || || || |||||
Sbjct 120 GGTTTTGACGAAGATCTGCAT 140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451994967891720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |