Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 129 5e-25 seq6 113 4e-20 seq4 109 5e-19 seq5 104 2e-17 seq642 89.7 5e-13 >seq3 Length=15215380 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || ||||||||||||||||| || ||||| Sbjct 11243714 ATCCCACCACGAAGACGCAACACAAGGTGAAGTGTTGATTCCTTTTGGATGTTGTAATCT 11243655 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || ||| | || |||| | ||||||||| Sbjct 11243654 GCAAGGGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAATCTCTATTGGTCCGGC 11243595 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 | || ||||| || |||||||| ||| || | || || ||||| ||| ||| Sbjct 11243594 GCGATCCCTTCCTTGTCTTGAATCTTTGTCTTTACATTATCAACAGTGTCTGAACTCTCA 11243535 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| |||| |||||||| || || ||||| ||||| ||||||||| Sbjct 11243534 ACTTCGAGGGTAATGGTTTTGCCAGTGAGTGTTTTCACAAATATTTGCATC 11243484 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| ||||| || ||||||||||||||||| || ||||| Sbjct 11192530 ATCCCACCACGAAGACGCAACACAAGATGAAGTGTTGATTCCTTTTGGATGTTGTAATCC 11192589 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | ||||| || || | || | | ||||| ||||| Sbjct 11192590 GCAAGAGTATGGCCATCCTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGTTCCGGA 11192649 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 | || ||||| || ||||| || || ||||| || | |||||| ||| ||| Sbjct 11192650 AGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGATGTTGTCAATGGTGTCTGAACTTTCG 11192709 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || ||||| || ||||| || ||||| | ||||||| Sbjct 11192710 ACCTCAAGAGTTATGGTCTTGCCTGTAAGAGTCTTAACAAAGA-TTGCATC 11192759 >seq6 Length=18523719 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || ||||||||||| |||||||| ||||| Sbjct 17514447 ATACCACCACGTAGACGCAACACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAATCC 17514388 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||| ||||| || ||| | || | || || ||||| || Sbjct 17514387 GCAAGTGTGCGACCATCCTCCAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGT 17514328 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || ||||| ||| |||| || | || | ||||| || ||| Sbjct 17514327 GGGATCCCTTCCTTGTCCTGAATCTTTGCCTTGA-CGTTATCGATTGTGTCTGAGCTCTC 17514269 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||||| ||||| || ||||| |||||||| ||||| Sbjct 17514268 AACCTCAAGAGTAATGGTTTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 17514218 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || || || || ||||| || || || || || | ||| || Sbjct 17513971 CACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCGAGTGTGCGACCATCTTC 17513912 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | | ||||||||||| ||||| || ||||||||||| Sbjct 17513911 TAGCTGCTTACCGGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATTCCCTCTTTATCTTG 17513852 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| ||||| || | |||||| || |||||| |||||||| | || || Sbjct 17513851 GATCTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCGACCTCGAGAGTGATGGTCTT 17513792 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||| |||||| ||||| ||||||||| Sbjct 17513791 GCCTGTTAAAGTTTTCACAAAGATTTGCATC 17513761 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| ||||| ||||| || ||||||||||| || ||||| Sbjct 17514219 ATACCACCACGGAGACGTAGCACAAGATGGAGCGTAGACTCCTTTTGGATGTTGTAATCC 17514160 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | ||||| || || | || | || |||||||| || Sbjct 17514159 GCGAGGGTGCGTCCGTCTTCAAGCTGTTTCCCCGCAAAGATGAGTCTCTGCTGGTCTGGT 17514100 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || ||||| || |||| || | || | ||||| ||| ||| Sbjct 17514099 GGGATCCCTTCCTTGTCCTGAATCTTCGCCTTGA-CGTTATCGATTGTGTCTGAACTCTC 17514041 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | |||||||| || || || || |||||||| ||||| Sbjct 17514040 AACCTCCAAAGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAAATCTGCAT 17513990 >seq4 Length=14320061 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || |||||||| ||||| || || ||| | Sbjct 6306109 CCACCACGGAGACGGAGGACGAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCG 6306168 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || ||||| ||| | |||||||| ||||||||||| || Sbjct 6306169 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGAGGG 6306228 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || |||| || | ||||||||| |||||||| Sbjct 6306229 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACC 6306288 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| |||| || || || ||||| ||||| || || || |||||| Sbjct 6306289 TCGAGGGTAATTGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATC 6306336 >seq5 Length=16150104 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| ||||||||||| || ||||| || || || || ||| | Sbjct 6389281 CCACCACGGAGACGGAGCACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCG 6389222 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| ||||| || ||| | || ||||| ||||||||||| ||| Sbjct 6389221 AGCGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATTAATCGCTGCTGGTCCGGTGGA 6389162 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || || || ||||| || | ||||||||| || ||||| Sbjct 6389161 ATTCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 6389102 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || ||||| ||||| || || || ||||| Sbjct 6389101 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 6389055 >seq642 Length=6837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||| | ||||||||||| || || || || || ||||||||||| Sbjct 1 CCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCC 60 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 |||| || | || | |||||| ||| |||||| ||||| || | ||| || |||||||| Sbjct 61 TTGA-CGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGGGTGATCGTCTTTCCGGTTAG 119 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| Sbjct 120 GGTTTTGACGAAGATCTGCAT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994967891720