Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq5 84.2 3e-11 >seq2 Length=13294645 Score = 120 bits (132), Expect = 4e-22 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | || || |||||| | || ||||||||||| ||||| Sbjct 9186708 CCTTCGTCTCGTGAGATCAACTCGTTGGAGAAGGTTAATCCGGGCATGAGACCTCGCTTT 9186649 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||| ||||||||||| || || || ||||||||||| || || ||||| ||||| Sbjct 9186648 TTCAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACCTTCGACACAGGCGAAA 9186589 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | ||||||||| | | || | ||| | |||||||||||||||||| Sbjct 9186588 GCGACGATTCTCTCGGCAAAAGTCTGAGA---TCCATCGATCCACTTCATCGCCCACTGG 9186532 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || || || ||| || |||| ||| | |||||| Sbjct 9186531 GCTTTCTTGGCGACGCAAGGGATGGTTTCGATCGC 9186497 >seq5 Length=16150104 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/277 (67%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| | ||||| || || || || | |||||||| | | Sbjct 10841195 AATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCC--TC 10841252 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | ||| || || | | ||| | || || |||||||| || ||||||||||| || | Sbjct 10841253 CTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATGC 10841312 Query 12910 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 | || || | || || || | ||||| ||||| ||||| ||||||| Sbjct 10841313 AAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTCTAACTCTAGACGCACCCACACCCA 10841372 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 13029 |||| | ||||||||| | | || | || || ||| || || | ||| || | Sbjct 10841373 CAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTCCAG 10841432 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | | |||| ||| | ||||||||| ||||| || || Sbjct 10841433 CCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGG 10841469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496026500120