Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 6e-32
seq683 132 2e-25
seq3 125 3e-23
seq7 107 8e-18
seq6 98.7 4e-15
seq2 98.7 4e-15
seq162 96.9 1e-14
>seq1
Length=19836964
Score = 154 bits (170), Expect = 6e-32
Identities = 415/629 (66%), Gaps = 22/629 (3%)
Strand=Plus/Minus
Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963
|| || || ||||| || ||| | |||||||||||||| | | ||| || ||
Sbjct 5140135 GTTCTGGTCGGAGGATCGACAAGGATTCCTAAAATTCAGCAGCTTTTGCAAGATTTCTTC 5140076
Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023
|| || | || || || ||| |||| ||||||||||||||||| ||||| |||||
Sbjct 5140075 AACGGGAAGGAGCTCTGCAAAAGCATAAACCCTGATGAAGCTGTTGCCTATGGAGCTGCG 5140016
Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTA 452083
||||| || || ||||| || ||| || || || | |||| ||||| | |
Sbjct 5140015 GTTCAGGCCGCGATTCTTACTGGTGAAGGAAGCGAGAAGGTGCAAGATCTTCTGCTTCTT 5139956
Query 452084 GATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATT 452143
|| || | || || |||||| |||| ||||| ||||| |||||||| |||||
Sbjct 5139955 GACGTGGCGCCGCTGAGCCTTGGACTTGAGACAGCCGGTGGGGTGATGACTGTGTTAAT- 5139897
Query 452144 AAACGAGGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA---GCAAGTG 452198
|||||| || | |||||||||| ||| ||| |||| ||| ||| |
Sbjct 5139896 -CCCGAGGAACACGACGGTTCCTTGTAAGAAGGAGCAAGTATTTTCCACATATGCA---G 5139841
Query 452199 ATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATA 452258
| || || ||||| || || ||||| | ||||||||||||||| | ||| ||| |
Sbjct 5139840 ACAATCAGCCAGGCGTTCTGATCCAAGTCTATGAAGGAGAACGTGCGAGGACCAAAGACA 5139781
Query 452259 ATAATAAACTAGGAGAATTTACTCTTTCAA--ACATTCCTCCTATGCCAAGGGGAACTCC 452316
| || || ||| ||| | |||| |||||||||| |||| | ||| |||
Sbjct 5139780 ACAACCTTCTTGGAACCTTTGAGC--TCAAGGGCATTCCTCCTGCGCCACGTGGAGTTCC 5139723
Query 452317 TCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA 452376
|||||| | || || ||| |||| || ||||| || | |||||| || | ||
Sbjct 5139722 TCAAATCAATGTTTGCTTTGACATTGACGCGAATGGGATCTTAAATGTGTCAGCGGAGGA 5139663
Query 452377 AAAATCATCTGGAAAATCAGAAAAA----ATTACAATTACTAATGATAAAAACCGTTTAT 452432
||| | |||| | ||| || || || || || || || ||| | ||
Sbjct 5139662 TAAAACCGCTGG----TGTGAAGAACCAGATCACGATCACGAACGACAAAGGAAGGTTGA 5139607
Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAAC 452492
|||||| ||||| || || ||||| | || || || || | ||||| || ||||| |
Sbjct 5139606 GTAAAGAGGATATAGAGAAGATGGTGCAAGATGCTGAGAAGTACAAGGCCGAGGATGAGC 5139547
Query 452493 AAGTTAGAAAACATGTTGAAGCTAAAAAC 452521
|||||| ||| || || || ||||||
Sbjct 5139546 AAGTTAAAAAGAGAGTGGAGGCCAAAAAC 5139518
>seq683
Length=6133
Score = 132 bits (146), Expect = 2e-25
Identities = 257/370 (69%), Gaps = 16/370 (4%)
Strand=Plus/Minus
Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297
|| ||| | |||||||| || || |||||||| | ||| ||| |||| || ||
Sbjct 3814 TTCGCTGCCGAAGAAATCTCCTCAATGGTTCTCATTAAGATGCGTGAAATCGCTAAAT-- 3757
Query 451298 TATATTGGT-TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356
|| ||||| |||| | | | | || || |||| ||||| ||||| ||||| || |
Sbjct 3756 TACCTTGGTATCTCAA-TCAAGAACGCCGTTGTTACCGTTCCTGCTTACTTCAACGACTC 3698
Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416
|| || ||||| || |||||||| ||| |||||||||||| || ||| | ||||| ||
Sbjct 3697 TCAGCGTCAAGCCAC-AAAGATGCTGGAGTTATTGCTGGTTTGAACGTTATGCGAATCAT 3639
Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAA-AAGAAACAGAAG 451475
||||| || || ||||| | || || ||| || || ||| ||| | | ||
Sbjct 3638 CAATGAGCCGACCGCAGCAG-TC------ATTGACAAG--AAGGCAACAAGCGTC-GGAG 3589
Query 451476 aaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAA 451535
| || || | || | ||| || ||||||| |||||| |||| ||| | || | |
Sbjct 3588 AGAAGAACGTGTTGATCTTTAATCTTGGTGGTGGAACTTTTGATGTCTCTCTTCTCACCA 3529
Query 451536 TTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAG 451595
||||||| || | || || || ||||||||| ||| || ||||| || | |||||||
Sbjct 3528 TTGAAGAAGGTATCTTAGAGGTCAAGGCAACCGCTGGAGACACTCAGCTTGCTGGTGAAG 3469
Query 451596 ATATTGATAA 451605
|| |||| ||
Sbjct 3468 ATTTTGACAA 3459
>seq3
Length=15215380
Score = 125 bits (138), Expect = 3e-23
Identities = 247/365 (68%), Gaps = 9/365 (2%)
Strand=Plus/Minus
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306
||||| || || || |||||||| || || ||| || | |||||| ||| ||||
Sbjct 3642677 GAAGAGATCTCCTCGATGGTTCTAACAAAGATGCGGGAGATTGCAGAAGCATACCTTGGA 3642618
Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366
||| | ||| | ||||| |||| || || ||||||||||| ||| | || || ||
Sbjct 3642617 TCTTCGATTAAGAACGCAGTGGTTACGGTGCCTGCTTATTTCAACGATTCTCAGCGTCAG 3642558
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|| || || || || ||| ||| ||||| | ||||| | || ||||| || || ||
Sbjct 3642557 GCGACGAAGGACGCTGGAGTTATCTCTGGTCTTAATGTGATGCGTATTATCAACGAGCCA 3642498
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAA------TCAAAAGAAACAGAAGaaaaa 451480
|| || ||||| | || ||||| || | ||| || | | | || ||
Sbjct 3642497 ACTGCTGCTGCGATTGCCTATGGTCTTGACAAAAAGGCCTCGAGTG---TTGGCGAGAAG 3642441
Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540
||| || | | |||||| | || || || ||| |||| ||| | ||| | |||||
Sbjct 3642440 AATGTTCTCATCTTTGATCTGGGCGGTGGTACTTTTGATGTCTCTCTGCTTACGATTGAG 3642381
Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600
|| || | |||||||| |||||||| |||||| || ||||| || ||||| ||| ||
Sbjct 3642380 GAAGGTATCTTTGAAGTCAAGGCAACGGCTGGTGACACGCATCTTGGTGGTGAGGATTTT 3642321
Query 451601 GATAA 451605
|| ||
Sbjct 3642320 GACAA 3642316
Score = 96.9 bits (106), Expect = 1e-14
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050
|| || || ||||||||||| |||||||| || ||||| ||||||||||| | |||
Sbjct 2633366 AACCCCGACGAAGCTGTTGCTTATGGTGCCGCTGTTCAGGCAGCTATTCTCAGCGGTGAG 2633307
Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110
| | |||| || | |||| | || || |||| || ||||| || ||||| || ||
Sbjct 2633306 GGTAATGAGAAGGTGCAAGATCTCCTCTTGCTAGACGTCACACCACTTTCTCTCGGTCTT 2633247
Query 452111 GAAACAGCTGGTGGAATGATGAC 452133
||||||||||| ||| | |||||
Sbjct 2633246 GAAACAGCTGGAGGAGTCATGAC 2633224
Score = 96.9 bits (106), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||| ||||| || || |||||||| |||||| |||
Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | | || || ||||||||||| ||||| || | || || ||
Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCAAGATAAAGAAGGCATCCAACCGGACCAG 11243832
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG-AACTTTGGCGGATTATAA 391228
|| | |||| || | ||||| || || |||||||| | ||||| |||||||||||
Sbjct 11243833 CAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATAA 11243892
Query 391229 TATTGATAAGGATGCAACACTTCAC 391253
||| | || || | || ||||||
Sbjct 11243893 CATTCAGAAAGAGTCTACTCTTCAC 11243917
Score = 91.5 bits (100), Expect = 6e-13
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112
||||||| || |||||||| ||||| ||||| ||||| || || ||||| || ||
Sbjct 11243490 AATATTT--GTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCAGAC 11243547
Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172
| |||| | | || ||| |||||||| |||||||| || | || || ||| |
Sbjct 11243548 ACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCAATAG 11243607
Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232
| || || ||| | || ||||| || || ||||| | || | || ||||| || ||
Sbjct 11243608 AGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAACATC 11243667
Query 391233 GATAAGGATGCAACACTTCACTTAGTATT 391261
| ||||| ||||||||||| | || ||
Sbjct 11243668 CAAAAGGAATCAACACTTCACCTTGTGTT 11243696
Score = 86.0 bits (94), Expect = 2e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115
|| || ||||| || || || || || || || |||||||| || ||| || || | |
Sbjct 11192753 ATCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTCAGACACC 11192694
Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175
||||| || || || || ||||| ||||||||||| | ||| || || || |
Sbjct 11192693 ATTGACAACATCAAGACCAAGATCCAAGACAAGGAAGGAATCCTTCCGGAACAGCAGAGG 11192634
Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235
| || || | || ||||| ||||| ||||| ||| | |||||||| || || |
Sbjct 11192633 CTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTGCGGATTACAACATCCAA 11192574
Query 391236 AAGGATGCAACACTTCA 391252
||||| ||||||||||
Sbjct 11192573 AAGGAATCAACACTTCA 11192557
>seq7
Length=17055980
Score = 107 bits (118), Expect = 8e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976
|| || || |||||||| ||||||| || ||||| ||||||||| | ||||| ||||
Sbjct 28472 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTT 28531
Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036
||||| || || |||||||||||| || | ||| ||||||||||| |||| || ||
Sbjct 28532 GAAATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCATGGGTTGGTTTCACCGAC 28591
Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065
|| || || || | || | ||||||||
Sbjct 28592 TCCGAGAGGCTCATTGGTGAGGCTGCTAA 28620
>seq6
Length=18523719
Score = 98.7 bits (108), Expect = 4e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || ||||| || || || ||||| ||||||||||| ||||| ||
Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || | || ||| ||||| || |||||||| || || || || |||
Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || ||| | |||||||| || || ||||| | || | |||||||| |||
Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACAAT 17514397
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261
|| | ||||| |||| |||||| | || ||
Sbjct 17514398 ATCCAGAAGGAATCAACCCTTCACCTTGTGTT 17514429
Score = 87.8 bits (96), Expect = 7e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324
|| || || || |||||||| || || ||| || |||| |||| | | ||
Sbjct 15490646 GTGCTGACAAAGATGAAAGAGACTGCCGAAGCTTACCTTGGAAAATCAGTCAAGAAAGCT 15490587
Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384
|| |||||||||| ||||| || |||||||| || |||| |||||||||||||| ||
Sbjct 15490586 GTTGTTACTGTTCCAGCTTACTTTAATGATGCTCAGAGGCAGGCAACTAAAGATGCGGGT 15490527
Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444
||||| || | |||| | ||||| || ||||| ||||| |||||||| |
Sbjct 15490526 AGGATTGCAGGCCTCGATGTAGAGAGGATTATAAACGAACCGACAGCTGCTGCTCTTTCC 15490467
Query 451445 TATGGA 451450
||||||
Sbjct 15490466 TATGGA 15490461
>seq2
Length=13294645
Score = 98.7 bits (108), Expect = 4e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976
|| ||||| |||||||| || || | || ||||| ||||||||| | ||||| ||||
Sbjct 88124 ATAGGAATAGATCTTGGTACAACATACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTT 88065
Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036
||||| || || |||||||||||| || | ||| || || ||||| |||| || ||
Sbjct 88064 GAAATCATTGCCAATGACCAAGGAAACCGTATTACACCCTCCTGGGTTGGTTTCACCGAC 88005
Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065
|| || || || | || ||||||||||
Sbjct 88004 TCCGAGAGGCTCATTGGTGAAGCTGCTAA 87976
>seq162
Length=43013
Score = 96.9 bits (106), Expect = 1e-14
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050
|| || || ||||||||||| |||||||| || ||||| ||||||||||| | |||
Sbjct 13288 AACCCCGACGAAGCTGTTGCTTATGGTGCCGCTGTTCAGGCAGCTATTCTCAGCGGTGAG 13229
Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110
| | |||| || | |||| | || || |||| || ||||| || ||||| || ||
Sbjct 13228 GGTAATGAGAAGGTGCAAGATCTCCTCTTGCTAGACGTCACACCACTTTCTCTCGGTCTT 13169
Query 452111 GAAACAGCTGGTGGAATGATGAC 452133
||||||||||| ||| | |||||
Sbjct 13168 GAAACAGCTGGAGGAGTCATGAC 13146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975681517659356
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