Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 154 6e-32 seq683 132 2e-25 seq3 125 3e-23 seq7 107 8e-18 seq6 98.7 4e-15 seq2 98.7 4e-15 seq162 96.9 1e-14 >seq1 Length=19836964 Score = 154 bits (170), Expect = 6e-32 Identities = 415/629 (66%), Gaps = 22/629 (3%) Strand=Plus/Minus Query 451904 GTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTT 451963 || || || ||||| || ||| | |||||||||||||| | | ||| || || Sbjct 5140135 GTTCTGGTCGGAGGATCGACAAGGATTCCTAAAATTCAGCAGCTTTTGCAAGATTTCTTC 5140076 Query 451964 GGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCA 452023 || || | || || || ||| |||| ||||||||||||||||| ||||| ||||| Sbjct 5140075 AACGGGAAGGAGCTCTGCAAAAGCATAAACCCTGATGAAGCTGTTGCCTATGGAGCTGCG 5140016 Query 452024 GTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTA 452083 ||||| || || ||||| || ||| || || || | |||| ||||| | | Sbjct 5140015 GTTCAGGCCGCGATTCTTACTGGTGAAGGAAGCGAGAAGGTGCAAGATCTTCTGCTTCTT 5139956 Query 452084 GATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATT 452143 || || | || || |||||| |||| ||||| ||||| |||||||| ||||| Sbjct 5139955 GACGTGGCGCCGCTGAGCCTTGGACTTGAGACAGCCGGTGGGGTGATGACTGTGTTAAT- 5139897 Query 452144 AAACGAGGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA---GCAAGTG 452198 |||||| || | |||||||||| ||| ||| |||| ||| ||| | Sbjct 5139896 -CCCGAGGAACACGACGGTTCCTTGTAAGAAGGAGCAAGTATTTTCCACATATGCA---G 5139841 Query 452199 ATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATA 452258 | || || ||||| || || ||||| | ||||||||||||||| | ||| ||| | Sbjct 5139840 ACAATCAGCCAGGCGTTCTGATCCAAGTCTATGAAGGAGAACGTGCGAGGACCAAAGACA 5139781 Query 452259 ATAATAAACTAGGAGAATTTACTCTTTCAA--ACATTCCTCCTATGCCAAGGGGAACTCC 452316 | || || ||| ||| | |||| |||||||||| |||| | ||| ||| Sbjct 5139780 ACAACCTTCTTGGAACCTTTGAGC--TCAAGGGCATTCCTCCTGCGCCACGTGGAGTTCC 5139723 Query 452317 TCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA 452376 |||||| | || || ||| |||| || ||||| || | |||||| || | || Sbjct 5139722 TCAAATCAATGTTTGCTTTGACATTGACGCGAATGGGATCTTAAATGTGTCAGCGGAGGA 5139663 Query 452377 AAAATCATCTGGAAAATCAGAAAAA----ATTACAATTACTAATGATAAAAACCGTTTAT 452432 ||| | |||| | ||| || || || || || || || ||| | || Sbjct 5139662 TAAAACCGCTGG----TGTGAAGAACCAGATCACGATCACGAACGACAAAGGAAGGTTGA 5139607 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAAC 452492 |||||| ||||| || || ||||| | || || || || | ||||| || ||||| | Sbjct 5139606 GTAAAGAGGATATAGAGAAGATGGTGCAAGATGCTGAGAAGTACAAGGCCGAGGATGAGC 5139547 Query 452493 AAGTTAGAAAACATGTTGAAGCTAAAAAC 452521 |||||| ||| || || || |||||| Sbjct 5139546 AAGTTAAAAAGAGAGTGGAGGCCAAAAAC 5139518 >seq683 Length=6133 Score = 132 bits (146), Expect = 2e-25 Identities = 257/370 (69%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || ||| | |||||||| || || |||||||| | ||| ||| |||| || || Sbjct 3814 TTCGCTGCCGAAGAAATCTCCTCAATGGTTCTCATTAAGATGCGTGAAATCGCTAAAT-- 3757 Query 451298 TATATTGGT-TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGC 451356 || ||||| |||| | | | | || || |||| ||||| ||||| ||||| || | Sbjct 3756 TACCTTGGTATCTCAA-TCAAGAACGCCGTTGTTACCGTTCCTGCTTACTTCAACGACTC 3698 Query 451357 ACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416 || || ||||| || |||||||| ||| |||||||||||| || ||| | ||||| || Sbjct 3697 TCAGCGTCAAGCCAC-AAAGATGCTGGAGTTATTGCTGGTTTGAACGTTATGCGAATCAT 3639 Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAA-AAGAAACAGAAG 451475 ||||| || || ||||| | || || ||| || || ||| ||| | | || Sbjct 3638 CAATGAGCCGACCGCAGCAG-TC------ATTGACAAG--AAGGCAACAAGCGTC-GGAG 3589 Query 451476 aaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAA 451535 | || || | || | ||| || ||||||| |||||| |||| ||| | || | | Sbjct 3588 AGAAGAACGTGTTGATCTTTAATCTTGGTGGTGGAACTTTTGATGTCTCTCTTCTCACCA 3529 Query 451536 TTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAG 451595 ||||||| || | || || || ||||||||| ||| || ||||| || | ||||||| Sbjct 3528 TTGAAGAAGGTATCTTAGAGGTCAAGGCAACCGCTGGAGACACTCAGCTTGCTGGTGAAG 3469 Query 451596 ATATTGATAA 451605 || |||| || Sbjct 3468 ATTTTGACAA 3459 >seq3 Length=15215380 Score = 125 bits (138), Expect = 3e-23 Identities = 247/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||||| || || || |||||||| || || ||| || | |||||| ||| |||| Sbjct 3642677 GAAGAGATCTCCTCGATGGTTCTAACAAAGATGCGGGAGATTGCAGAAGCATACCTTGGA 3642618 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 ||| | ||| | ||||| |||| || || ||||||||||| ||| | || || || Sbjct 3642617 TCTTCGATTAAGAACGCAGTGGTTACGGTGCCTGCTTATTTCAACGATTCTCAGCGTCAG 3642558 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || || || ||| ||| ||||| | ||||| | || ||||| || || || Sbjct 3642557 GCGACGAAGGACGCTGGAGTTATCTCTGGTCTTAATGTGATGCGTATTATCAACGAGCCA 3642498 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAA------TCAAAAGAAACAGAAGaaaaa 451480 || || ||||| | || ||||| || | ||| || | | | || || Sbjct 3642497 ACTGCTGCTGCGATTGCCTATGGTCTTGACAAAAAGGCCTCGAGTG---TTGGCGAGAAG 3642441 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 ||| || | | |||||| | || || || ||| |||| ||| | ||| | ||||| Sbjct 3642440 AATGTTCTCATCTTTGATCTGGGCGGTGGTACTTTTGATGTCTCTCTGCTTACGATTGAG 3642381 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | |||||||| |||||||| |||||| || ||||| || ||||| ||| || Sbjct 3642380 GAAGGTATCTTTGAAGTCAAGGCAACGGCTGGTGACACGCATCTTGGTGGTGAGGATTTT 3642321 Query 451601 GATAA 451605 || || Sbjct 3642320 GACAA 3642316 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || || ||||||||||| |||||||| || ||||| ||||||||||| | ||| Sbjct 2633366 AACCCCGACGAAGCTGTTGCTTATGGTGCCGCTGTTCAGGCAGCTATTCTCAGCGGTGAG 2633307 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | | |||| || | |||| | || || |||| || ||||| || ||||| || || Sbjct 2633306 GGTAATGAGAAGGTGCAAGATCTCCTCTTGCTAGACGTCACACCACTTTCTCTCGGTCTT 2633247 Query 452111 GAAACAGCTGGTGGAATGATGAC 452133 ||||||||||| ||| | ||||| Sbjct 2633246 GAAACAGCTGGAGGAGTCATGAC 2633224 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| ||||| || || |||||||| |||||| ||| Sbjct 11243713 ATGCAGATCTTTGTCAAGACTTTGACGGGTAAGACCATCACTCTTGAGGTTGAAAGCTCT 11243772 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||||||||| ||||| || | || || || Sbjct 11243773 GATATGATTGATAATGTGAAGGCCAAGATTCAAGATAAAGAAGGCATCCAACCGGACCAG 11243832 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAG-AACTTTGGCGGATTATAA 391228 || | |||| || | ||||| || || |||||||| | ||||| ||||||||||| Sbjct 11243833 CAGAGGCTAATCTTTGCCGGGAATCAGCTCGAAGATGGTCGCGACTTTAGCGGATTATAA 11243892 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || |||||| Sbjct 11243893 CATTCAGAAAGAGTCTACTCTTCAC 11243917 Score = 91.5 bits (100), Expect = 6e-13 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 ||||||| || |||||||| ||||| ||||| ||||| || || ||||| || || Sbjct 11243490 AATATTT--GTGAAAACACTCACTGGCAAAACCATTACCCTCGAAGTTGAGAGTTCAGAC 11243547 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | |||| | | || ||| |||||||| |||||||| || | || || ||| | Sbjct 11243548 ACTGTTGATAATGTAAAGACAAAGATTCAAGACAAGGAAGGGATCGCGCCGGACCAATAG 11243607 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 | || || ||| | || ||||| || || ||||| | || | || ||||| || || Sbjct 11243608 AGATTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACCCTTGCAGATTACAACATC 11243667 Query 391233 GATAAGGATGCAACACTTCACTTAGTATT 391261 | ||||| ||||||||||| | || || Sbjct 11243668 CAAAAGGAATCAACACTTCACCTTGTGTT 11243696 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 || || ||||| || || || || || || || |||||||| || ||| || || | | Sbjct 11192753 ATCTTTGTTAAGACTCTTACAGGCAAGACCATAACTCTTGAGGTCGAAAGTTCAGACACC 11192694 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 ||||| || || || || ||||| ||||||||||| | ||| || || || | Sbjct 11192693 ATTGACAACATCAAGACCAAGATCCAAGACAAGGAAGGAATCCTTCCGGAACAGCAGAGG 11192634 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || | || ||||| ||||| ||||| ||| | |||||||| || || | Sbjct 11192633 CTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCATACTCTTGCGGATTACAACATCCAA 11192574 Query 391236 AAGGATGCAACACTTCA 391252 ||||| |||||||||| Sbjct 11192573 AAGGAATCAACACTTCA 11192557 >seq7 Length=17055980 Score = 107 bits (118), Expect = 8e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| ||||||| || ||||| ||||||||| | ||||| |||| Sbjct 28472 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTT 28531 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || |||||||||||| || | ||| ||||||||||| |||| || || Sbjct 28532 GAAATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCATGGGTTGGTTTCACCGAC 28591 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || || || || | || | |||||||| Sbjct 28592 TCCGAGAGGCTCATTGGTGAGGCTGCTAA 28620 >seq6 Length=18523719 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || ||||| ||||||||||| ||||| || Sbjct 17514218 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAAACCATTACTCTTGAGGTTGAGAGCTCA 17514277 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | || ||| ||||| || |||||||| || || || || ||| Sbjct 17514278 GACACAATCGATAACGTCAAGGCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAA 17514337 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | |||||||| || || ||||| | || | |||||||| ||| Sbjct 17514338 CAGAGACTCATCTTCGCTGGGAAACAGCTGGAGGATGGTCGCACACTTGCGGATTACAAT 17514397 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| |||| |||||| | || || Sbjct 17514398 ATCCAGAAGGAATCAACCCTTCACCTTGTGTT 17514429 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || || || || |||||||| || || ||| || |||| |||| | | || Sbjct 15490646 GTGCTGACAAAGATGAAAGAGACTGCCGAAGCTTACCTTGGAAAATCAGTCAAGAAAGCT 15490587 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||||| ||||| || |||||||| || |||| |||||||||||||| || Sbjct 15490586 GTTGTTACTGTTCCAGCTTACTTTAATGATGCTCAGAGGCAGGCAACTAAAGATGCGGGT 15490527 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||||| || | |||| | ||||| || ||||| ||||| |||||||| | Sbjct 15490526 AGGATTGCAGGCCTCGATGTAGAGAGGATTATAAACGAACCGACAGCTGCTGCTCTTTCC 15490467 Query 451445 TATGGA 451450 |||||| Sbjct 15490466 TATGGA 15490461 >seq2 Length=13294645 Score = 98.7 bits (108), Expect = 4e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || ||||| |||||||| || || | || ||||| ||||||||| | ||||| |||| Sbjct 88124 ATAGGAATAGATCTTGGTACAACATACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTT 88065 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || |||||||||||| || | ||| || || ||||| |||| || || Sbjct 88064 GAAATCATTGCCAATGACCAAGGAAACCGTATTACACCCTCCTGGGTTGGTTTCACCGAC 88005 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || || || || | || |||||||||| Sbjct 88004 TCCGAGAGGCTCATTGGTGAAGCTGCTAA 87976 >seq162 Length=43013 Score = 96.9 bits (106), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || || ||||||||||| |||||||| || ||||| ||||||||||| | ||| Sbjct 13288 AACCCCGACGAAGCTGTTGCTTATGGTGCCGCTGTTCAGGCAGCTATTCTCAGCGGTGAG 13229 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | | |||| || | |||| | || || |||| || ||||| || ||||| || || Sbjct 13228 GGTAATGAGAAGGTGCAAGATCTCCTCTTGCTAGACGTCACACCACTTTCTCTCGGTCTT 13169 Query 452111 GAAACAGCTGGTGGAATGATGAC 452133 ||||||||||| ||| | ||||| Sbjct 13168 GAAACAGCTGGAGGAGTCATGAC 13146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975681517659356