Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21]
1,457 sequences; 137,073,209 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 3e-30
seq1 120 4e-22
seq7 109 7e-19
seq4 107 2e-18
seq5 104 3e-17
>seq2
Length=13294645
Score = 147 bits (162), Expect = 3e-30
Identities = 376/569 (66%), Gaps = 5/569 (1%)
Strand=Plus/Plus
Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805
||||||| | ||||||| | | || ||||| ||||||| | || ||||||||
Sbjct 9186144 ACAGATTCTGTATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCG 9186203
Query 101806 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 101865
|| | ||||| || ||||| || ||||| || | || ||| ||| |||
Sbjct 9186204 AAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTTCGCAAGACGGTCGCGACTGGGAGA 9186263
Query 101866 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCG 101925
|||||| || ||| | ||||| ||| || | || || ||||| || | || |
Sbjct 9186264 ATCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAG 9186323
Query 101926 ATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAG 101985
| ||||| ||| | |||||| || | | ||| || |||||| ||| || |
Sbjct 9186324 ACGGAATCGTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGG 9186383
Query 101986 CGAGATCTTTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATACAGT 102044
|| | ||||||| | || || | || || || | | || |||| ||||||
Sbjct 9186384 CGCGTGCTTTCTACG-GTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGT 9186442
Query 102045 AAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATC 102104
||| | |||| || || ||||| |||| | || ||||| || |||
Sbjct 9186443 CTCCTCCTCGACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATC 9186502
Query 102105 CAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG 102164
|||| | || || | |||||||| | ||||| ||||||||| | ||| |
Sbjct 9186503 GAAACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGA--- 9186559
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| | | ||||| ||| || || |||| || || ||||| || ||||||||||||||
Sbjct 9186560 TCTCAGACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCC 9186619
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
||| ||||||| | |||| ||||| || ||||||||||||||||| || | ||||
Sbjct 9186620 GGTAGCTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTC 9186679
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGG 102313
||||||||| | ||||| || ||||| ||
Sbjct 9186680 TCCAACGAGTTGATCTCACGAGACGAAGG 9186708
>seq1
Length=19836964
Score = 120 bits (132), Expect = 4e-22
Identities = 297/447 (66%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| | || | || ||||| ||||| | | || |||||
Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697
Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|| | |||| || ||| || | ||||||||||||||||| |||| ||||| ||
Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061
| || ||||| | ||||||||| || |||| |||| | | |||| | ||
Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 1801814
Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121
|| ||||| || ||||| | || || ||||| || |||||| || || ||
Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874
Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181
||||| || || | ||| || ||||| ||||||||||| ||||| | | | | |
Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAG-A 1801933
Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
|| | | |||||| ||| || |||||| ||||||||| || | || || || ||
Sbjct 1801934 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1801993
Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 16300
||||| || ||| | ||||| ||||| || ||| ||| ||| | | | |
Sbjct 1801994 AGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGAA 1802053
Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCAC 16327
|||||||| | ||| ||||| |||||
Sbjct 1802054 CCTCTCAGGCTTCTTCAGAAACTCCAC 1802080
>seq7
Length=17055980
Score = 109 bits (120), Expect = 7e-19
Identities = 198/282 (70%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||||||||||||||| ||||||||||| ||||| || || || | ||||||||| ||
Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485
Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | || |||||| | | |||| | || || |||||||||||||| || || || ||
Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425
Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147
|| || |||||| || || ||||| | ||||| || || || | || || ||
Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 4202369
Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207
||||||||| | ||||||||| | | || | ||| || ||| || || | |||
Sbjct 4202368 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTC 4202309
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| || | |||| || | ||| ||||| || || || ||
Sbjct 4202308 TCCAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267
>seq4
Length=14320061
Score = 107 bits (118), Expect = 2e-18
Identities = 277/416 (67%), Gaps = 12/416 (3%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975
||||| || || | | ||| || || || | || | |||||| |||| | || |||
Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTT--CAA 12447137
Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035
| ||||||||||| || | ||||| || | ||| ||||| | ||||||||| ||
Sbjct 12447138 ATCCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC-- 12447195
Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
|||| || | | | |||| | || || |||||||| ||||| | ||||| ||||
Sbjct 12447196 -ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGC 12447254
Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152
| || ||||| || | || ||||| || || | ||| || |||||||
Sbjct 12447255 AAGGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAA 12447314
Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211
|||||||||| ||||| | | ||||| || | || ||| || ||| || ||||||
Sbjct 12447315 CAAACATCTCAACAAACTCAGAACCGGAA-ATCGAGAAGAAAGGCACACCAGCTTCACCA 12447373
Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271
||||| ||| || | ||| || || || ||||| || ||| || || |||||
Sbjct 12447374 GCAATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCT 12447433
Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327
|| ||| ||| ||| || | ||||||| || | ||| ||||| || ||
Sbjct 12447434 TTAGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGAC 12447489
>seq5
Length=16150104
Score = 104 bits (114), Expect = 3e-17
Identities = 195/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| ||||| | ||| ||||| || || || | |||||||| ||
Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | ||| ||||| | | ||| ||||||| || ||||||||||||||||| || |||
Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311
Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149
|| || || | ||| || || ||||| | || || || | || |||||||
Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTC-TA-ACTCTAGACGCACCCACAC 10841369
Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209
| ||||| | ||||||||| | | || | || || ||| || || | ||| |
Sbjct 10841370 CCACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTC 10841429
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250
| || | |||| ||| | || |||||||||||||| |||
Sbjct 10841430 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620731094729040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |