Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schrenkiella_20parvula_20[genbank_20GCA_5F000218505.1_202011-06-21] 1,457 sequences; 137,073,209 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 seq1 120 4e-22 seq7 109 7e-19 seq4 107 2e-18 seq5 104 3e-17 >seq2 Length=13294645 Score = 147 bits (162), Expect = 3e-30 Identities = 376/569 (66%), Gaps = 5/569 (1%) Strand=Plus/Plus Query 101746 ACAGATTTACTGTGTTCCCCCTGAAGTATCCACACCTCTGGGAACTCTATAAGAAGGCTC 101805 ||||||| | ||||||| | | || ||||| ||||||| | || |||||||| Sbjct 9186144 ACAGATTCTGTATGTTCCCGATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCG 9186203 Query 101806 AAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGA 101865 || | ||||| || ||||| || ||||| || | || ||| ||| ||| Sbjct 9186204 AAGCATCTTTCTGGACGGCCGAAGAAGTCGATCTTTCGCAAGACGGTCGCGACTGGGAGA 9186263 Query 101866 CTCTAAATGAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCG 101925 |||||| || ||| | ||||| ||| || | || || ||||| || | || | Sbjct 9186264 ATCTAAACGACGGCGAACGACACTTCATCAAACACGTACTCGCCTTCTTCGCCGCCTCAG 9186323 Query 101926 ATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAG 101985 | ||||| ||| | |||||| || | | ||| || |||||| ||| || | Sbjct 9186324 ACGGAATCGTTCTGGAGAATCTCGCTTCCCGATTTATGTCCGATGTGCAAGTCTCGGAGG 9186383 Query 101986 CGAGATCTTTCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATACAGT 102044 || | ||||||| | || || | || || || | | || |||| |||||| Sbjct 9186384 CGCGTGCTTTCTACG-GTTTCCAGATCGCGATTGAGAACATACACTCCGAGATGTACAGT 9186442 Query 102045 AAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATC 102104 ||| | |||| || || ||||| |||| | || ||||| || ||| Sbjct 9186443 CTCCTCCTCGACACTTACATCAAGGACAACAAAGAGAGAGACCATCTCTTCCGCGCGATC 9186502 Query 102105 CAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG 102164 |||| | || || | |||||||| | ||||| ||||||||| | ||| | Sbjct 9186503 GAAACCATCCCTTGCGTCGCCAAGAAAGCCCAGTGGGCGATGAAGTGGATCGATGGA--- 9186559 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || | | ||||| ||| || || |||| || || ||||| || |||||||||||||| Sbjct 9186560 TCTCAGACTTTTGCCGAGAGAATCGTCGCTTTCGCCTGTGTCGAAGGTATCTTCTTCTCC 9186619 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||| ||||||| | |||| ||||| || ||||||||||||||||| || | |||| Sbjct 9186620 GGTAGCTTCTGCTCGATTTTCTGGCTGAAAAAGCGAGGTCTCATGCCCGGATTAACCTTC 9186679 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||||||| | ||||| || ||||| || Sbjct 9186680 TCCAACGAGTTGATCTCACGAGACGAAGG 9186708 >seq1 Length=19836964 Score = 120 bits (132), Expect = 4e-22 Identities = 297/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | || ||||| ||||| | | || ||||| Sbjct 1801638 CGGTCAAAACGCCCTGGTCTCAGCAAGGCAGAGTCAAGAATATCTGCCCTGTTGGTTGCA 1801697 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || | |||| || ||| || | ||||||||||||||||| |||| ||||| || Sbjct 1801698 GCAACTACAATAACACCAGTATTACCCTCAAAACCATCCATCTCCGTCAGGAGCTGATTT 1801757 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 1801758 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 1801814 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || ||||| || ||||| | || || ||||| || |||||| || || || Sbjct 1801815 ACAGCATCTATTTCATCCACAAAAACAATGCAAGGAGCATTTTCCTTGGCTTTTTTGAAA 1801874 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 1801875 AGATCACGGACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGACCCAG-A 1801933 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || | | |||||| ||| || |||||| ||||||||| || | || || || || Sbjct 1801934 GATGGAAAAGAAGGGTACACCAGCTTCACCAGCAATGGCTTTTGCCAACAGGGTTTTCCC 1801993 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 16300 ||||| || ||| | ||||| ||||| || ||| ||| ||| | | | | Sbjct 1801994 AGTACCAGGAGGACCAACAAGGAGAACACCTTTAGGGATCCGGGCACCAACTGCGGTGAA 1802053 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||||||| | ||| ||||| ||||| Sbjct 1802054 CCTCTCAGGCTTCTTCAGAAACTCCAC 1802080 >seq7 Length=17055980 Score = 109 bits (120), Expect = 7e-19 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| ||||||||||| ||||| || || || | ||||||||| || Sbjct 4202542 AAAACCATCCATCTCCGTCAAAAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCT-- 4202485 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || |||||| | | |||| | || || |||||||||||||| || || || || Sbjct 4202484 CCTCCCATACCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCTATAAAAACAATA 4202425 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || || |||||| || || ||||| | ||||| || || || | || || || Sbjct 4202424 CAAGG--AGCTTTCGCTTTCGCCTTCTCAAACAAATCCC-TA-ACCCTAGACGCACCAAC 4202369 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||| | ||||||||| | | || | ||| || ||| || || | ||| Sbjct 4202368 ACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAGAAGAATGGCACTCCTGCTTC 4202309 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| || || || || Sbjct 4202308 TCCAGCCACCGCTCTAGCCAAAAGCGTCTTCCCTGTTCCAGG 4202267 >seq4 Length=14320061 Score = 107 bits (118), Expect = 2e-18 Identities = 277/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| || || || | || | |||||| |||| | || ||| Sbjct 12447080 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACTACGATAATACCGGTGTTACCTT--CAA 12447137 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | ||||| || | ||| ||||| | ||||||||| || Sbjct 12447138 ATCCATCCATCTCAGTTAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC-- 12447195 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||| ||||| | ||||| |||| Sbjct 12447196 -ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCTACAAAGACAATGC 12447254 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 | || ||||| || | || ||||| || || | ||| || ||||||| Sbjct 12447255 AAGGAGCGTTTTCCTTGGCTTTCTTGAATAGATCGCGGACTCTTGAGGCACCAACACCAA 12447314 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | | ||||| || | || ||| || ||| || |||||| Sbjct 12447315 CAAACATCTCAACAAACTCAGAACCGGAA-ATCGAGAAGAAAGGCACACCAGCTTCACCA 12447373 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| ||| || | ||| || || || ||||| || ||| || || ||||| Sbjct 12447374 GCAATAGCTTTTGCCAAAAGCGTTTTCCCGGTACCAGGAGGACCAATAAGTAGAACACCT 12447433 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || ||| ||| ||| || | ||||||| || | ||| ||||| || || Sbjct 12447434 TTAGGGATCCGGGCACCAACGGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCGAC 12447489 >seq5 Length=16150104 Score = 104 bits (114), Expect = 3e-17 Identities = 195/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| ||||| || || || | |||||||| || Sbjct 10841194 AAATCCATCCATCTCAGTCAACAACTGATTAATCGTCTGCTCTCTCTCATCATTTCCT-- 10841251 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| ||||||| || ||||||||||||||||| || ||| Sbjct 10841252 CCTCCCATCCCAGCTCCTCTCTGCCTTCCCACAGCGTCAATCTCATCAATGAAAACAATG 10841311 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 || || || | ||| || || ||||| | || || || | || ||||||| Sbjct 10841312 CAAGGAGCTTTAGCCTTAGCCTTCTCGAAAAGATCTC-TA-ACTCTAGACGCACCCACAC 10841369 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||| | ||||||||| | | || | || || ||| || || | ||| | Sbjct 10841370 CCACAAAAAGCTCCACAAACTCCGAAGCCGCGCAGGAGAAGAACGGTACTCCTGCTTCTC 10841429 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 | || | |||| ||| | || |||||||||||||| ||| Sbjct 10841430 CAGCCACCGCTCTGGCCAAGAGGGTCTTACCCGTACCGGGC 10841470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620731094729040